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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943627
Clone id YMU02A01NGRL0003_H02
Library
Length 328
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_H02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAAGAGTTCTGCTGCAATGGCACTGTAGTTCAGGATCCCGAGCTGGGTCAGGTGATTCAG
CTTCAAGGCGATCAGCGCAAGAATGTGTCGCAGTTTCTTGTGCAGGCTGGGCTTGTGAAG
AAGGACGACATTAAGATTCATGGTTTCTGAGGTTGTACTTGCAAAGGCTTTCTGTGTGTC
GATTTCGTCTGTCTTTAACCTGGTTGCATGAACGCAGATCAAGGATTTTTGGCTGTTATG
ATTGTCAAGGTGAAACTTAAATGATTATGAGCTTTTTTGTAAGTTGCCCTCTTTGCCTCA
NAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O48650
Definition sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=Salix bakko
Align length 49
Score (bit) 97.4
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943627|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_H02, 5'
         (301 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=...    97   2e-20
sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog OS=...    97   3e-20
sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=...    97   3e-20
sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=...    97   3e-20
sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=...    97   3e-20
sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=...    97   3e-20
sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 ...    96   4e-20
sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 ...    96   4e-20
sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog OS=...    84   3e-16
sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 ...    79   9e-15
sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 ...    79   9e-15
sp|P51971|EIF1_CHICK Eukaryotic translation initiation factor 1 ...    79   9e-15
sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 ...    79   9e-15
sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 ...    78   1e-14
sp|P61220|EIF1B_PIG Eukaryotic translation initiation factor 1b ...    78   2e-14
sp|Q9CXU9|EIF1B_MOUSE Eukaryotic translation initiation factor 1...    78   2e-14
sp|Q4R4X9|EIF1B_MACFA Eukaryotic translation initiation factor 1...    78   2e-14
sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1...    78   2e-14
sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=...    74   2e-13
sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=...    73   4e-13
sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eI...    66   5e-11
sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosa...    65   8e-11
sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya g...    62   7e-10
sp|Q5UQD7|SUI1_MIMIV Protein translation factor SUI1 homolog OS=...    39   0.008
sp|Q9QZW9|MNX1_MOUSE Motor neuron and pancreas homeobox protein ...    31   1.7  
sp|Q810P2|OD3L1_MOUSE Outer dense fiber protein 3-like protein 1...    30   2.9  
sp|P52976|FTSZ_CAUCR Cell division protein ftsZ OS=Caulobacter c...    30   2.9  
sp|P50219|MNX1_HUMAN Motor neuron and pancreas homeobox protein ...    30   4.9  

>sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog
           OS=Salix bakko PE=3 SV=1
          Length = 113

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 45/49 (91%), Positives = 48/49 (97%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK++IKIHGF
Sbjct: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113


>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog
           OS=Sporobolus stapfianus PE=3 SV=1
          Length = 115

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 67  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115


>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog
           OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1
          Length = 115

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 67  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115


>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog
           OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1
          Length = 115

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 67  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115


>sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=Zea
           mays GN=TIF PE=3 SV=1
          Length = 115

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 67  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115


>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog
           OS=Brassica oleracea PE=3 SV=1
          Length = 113

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQD ELGQVIQLQGDQRKNVS FLVQAGLVKKDDI+IHGF
Sbjct: 65  KEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113


>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2
           OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1
          Length = 113

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQD ELGQVIQLQGDQRKNVS FLVQAGLVKKD+IKIHGF
Sbjct: 65  KEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1
           OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2
          Length = 113

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQD ELGQVIQLQGDQRKNVS FLVQAGLVKKD+IKIHGF
Sbjct: 65  KEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog
           OS=Pimpinella brachycarpa PE=3 SV=1
          Length = 113

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 38/49 (77%), Positives = 42/49 (85%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           K  CCNGTVV D ELG+VIQLQGDQRKNVS F+VQAG+VKKD IK+H F
Sbjct: 65  KALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113


>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1
           OS=Pongo abelii GN=EIF1 PE=3 SV=1
          Length = 113

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 33/49 (67%), Positives = 41/49 (83%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           K+F CNGTV++ PE G+VIQLQGDQRKN+ QFLV+ GL K D +K+HGF
Sbjct: 65  KKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
tr_hit_id Q8RVJ0
Definition tr|Q8RVJ0|Q8RVJ0_PINPS Putative translation factor OS=Pinus pinaster
Align length 49
Score (bit) 99.0
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943627|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_H02, 5'
         (301 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8RVJ0|Q8RVJ0_PINPS Putative translation factor OS=Pinus pina...    99   1e-19
tr|A9NK09|A9NK09_PICSI Putative uncharacterized protein OS=Picea...    99   1e-19
tr|Q09PG4|Q09PG4_9ROSI Putative uncharacterized protein OS=Viola...    99   1e-19
tr|A9XNZ1|A9XNZ1_9MYRT Putative translation factor (Fragment) OS...    97   3e-19
tr|A9XNZ0|A9XNZ0_9MYRT Putative translation factor (Fragment) OS...    97   3e-19
tr|A9XNY8|A9XNY8_9MYRT Putative translation factor (Fragment) OS...    97   3e-19
tr|B6TVN6|B6TVN6_MAIZE Protein translation factor SUI1 OS=Zea ma...    97   4e-19
tr|A9PGM8|A9PGM8_POPTR Putative uncharacterized protein OS=Popul...    97   4e-19
tr|Q9SM63|Q9SM63_PHLPR Putative uncharacterized protein SUI1 (Fr...    97   5e-19
tr|Q84LW9|Q84LW9_COFAR SUI1 protein OS=Coffea arabica GN=sui1 PE...    97   5e-19
tr|Q71R35|Q71R35_ORYCO Translational initiation factor eIF1 OS=O...    97   5e-19
tr|B8B6X0|B8B6X0_ORYSI Putative uncharacterized protein OS=Oryza...    97   5e-19
tr|B7F683|B7F683_ORYSJ cDNA clone:J013170I05, full insert sequen...    97   5e-19
tr|B6VAI6|B6VAI6_ORYSI Translation initiation factor eIF1 OS=Ory...    97   5e-19
tr|B4FFG3|B4FFG3_MAIZE Protein translation factor SUI1 OS=Zea ma...    97   5e-19
tr|A9P9X9|A9P9X9_POPTR Putative uncharacterized protein OS=Popul...    97   5e-19
tr|A3BKK0|A3BKK0_ORYSJ Putative uncharacterized protein OS=Oryza...    97   5e-19
tr|Q9FFV1|Q9FFV1_ARATH Protein translation factor Sui1 homolog (...    96   7e-19
tr|Q6L4U9|Q6L4U9_ORYSJ Os05g0498400 protein OS=Oryza sativa subs...    96   9e-19
tr|B8AZK8|B8AZK8_ORYSI Putative uncharacterized protein OS=Oryza...    96   9e-19
tr|A9XNY9|A9XNY9_9MYRT Putative translation factor (Fragment) OS...    96   9e-19
tr|A3B5I0|A3B5I0_ORYSJ Putative uncharacterized protein OS=Oryza...    96   9e-19
tr|Q5ZBT6|Q5ZBT6_ORYSJ Putative translation initiation factor OS...    96   1e-18
tr|B8AAU0|B8AAU0_ORYSI Putative uncharacterized protein OS=Oryza...    96   1e-18
tr|B3TM00|B3TM00_ELAGV Translational initiation factor eIF1 OS=E...    95   1e-18
tr|B3TLY4|B3TLY4_ELAGV Translational initiation factor eIF1 OS=E...    95   1e-18
tr|A9RR49|A9RR49_PHYPA Predicted protein OS=Physcomitrella paten...    95   1e-18
tr|A9RE84|A9RE84_PHYPA Predicted protein (Fragment) OS=Physcomit...    95   1e-18
tr|A5LGK6|A5LGK6_POTDI Translational initiation factor eIF1 (Fra...    95   1e-18
tr|Q84LW8|Q84LW8_COFAR SUI1 protein OS=Coffea arabica GN=sui1 PE...    94   3e-18

>tr|Q8RVJ0|Q8RVJ0_PINPS Putative translation factor OS=Pinus
           pinaster PE=4 SV=1
          Length = 113

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 46/49 (93%), Positives = 48/49 (97%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKKD+IKIHGF
Sbjct: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKDNIKIHGF 113


>tr|A9NK09|A9NK09_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 113

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 46/49 (93%), Positives = 48/49 (97%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKKD+IKIHGF
Sbjct: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKDNIKIHGF 113


>tr|Q09PG4|Q09PG4_9ROSI Putative uncharacterized protein OS=Viola
           baoshanensis PE=4 SV=1
          Length = 113

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 46/49 (93%), Positives = 48/49 (97%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKKD+IKIHGF
Sbjct: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 113


>tr|A9XNZ1|A9XNZ1_9MYRT Putative translation factor (Fragment)
           OS=Sonneratia apetala PE=4 SV=1
          Length = 114

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 66  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDRIKIHGF 114


>tr|A9XNZ0|A9XNZ0_9MYRT Putative translation factor (Fragment)
           OS=Sonneratia ovata PE=4 SV=1
          Length = 114

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 66  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDRIKIHGF 114


>tr|A9XNY8|A9XNY8_9MYRT Putative translation factor (Fragment)
           OS=Sonneratia alba PE=4 SV=1
          Length = 114

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 46/49 (93%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 66  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDRIKIHGF 114


>tr|B6TVN6|B6TVN6_MAIZE Protein translation factor SUI1 OS=Zea mays
           PE=4 SV=1
          Length = 115

 Score = 97.1 bits (240), Expect = 4e-19
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNV+ FLVQAG+VKKD IKIHGF
Sbjct: 67  KEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKDSIKIHGF 115


>tr|A9PGM8|A9PGM8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 113

 Score = 97.1 bits (240), Expect = 4e-19
 Identities = 45/49 (91%), Positives = 48/49 (97%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK++IKIHGF
Sbjct: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113


>tr|Q9SM63|Q9SM63_PHLPR Putative uncharacterized protein SUI1
           (Fragment) OS=Phleum pratense GN=SUI1 PE=2 SV=1
          Length = 95

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 47  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 95


>tr|Q84LW9|Q84LW9_COFAR SUI1 protein OS=Coffea arabica GN=sui1 PE=4
           SV=1
          Length = 113

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   KEFCCNGTVVQDPELGQVIQLQGDQRKNVSQFLVQAGLVKKDDIKIHGF 147
           KEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 65  KEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKEHIKIHGF 113