Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943633|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_H09, 5' (277 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla... 106 4e-23 sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl... 99 5e-21 sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl... 97 3e-20 sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl... 65 1e-10 sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl... 63 5e-10 sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas... 63 5e-10 sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop... 62 1e-09 sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor... 61 2e-09 sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloropl... 60 3e-09 sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro... 59 8e-09 sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl... 58 1e-08 sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl... 58 1e-08 sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas... 58 1e-08 sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop... 58 2e-08 sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas... 58 2e-08 sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas... 58 2e-08 sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 memb... 58 2e-08 sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chl... 58 2e-08 sp|P20865|CB2_DUNSA Chlorophyll a-b binding protein of LHCII typ... 57 2e-08 sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII typ... 57 3e-08 sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb... 57 3e-08 sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb... 57 3e-08 sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl... 57 4e-08 sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chlorop... 57 4e-08 sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII ty... 57 4e-08 sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas... 57 4e-08 sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop... 56 5e-08 sp|P10707|CB2D_SOLLC Chlorophyll a-b binding protein 1D (Fragmen... 56 5e-08 sp|P14275|CB2C_SOLLC Chlorophyll a-b binding protein 1C, chlorop... 56 5e-08 sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop... 56 5e-08
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Length = 252
Score = 106 bits (264), Expect = 4e-23 Identities = 47/62 (75%), Positives = 53/62 (85%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKEIANGRLAMLAFLGF+IQHN+TGK P DNL H++DPWHNTI+QTL Sbjct: 190 NPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249
Query: 182 QG 187 G Sbjct: 250 GG 251
>sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1 Length = 251
Score = 99.4 bits (246), Expect = 5e-21 Identities = 43/59 (72%), Positives = 50/59 (84%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQT 178 NP NF + E KEKE+ANGRLAMLAFLGFV+QHN+TGK P +NL HL+DPWHNTI+QT Sbjct: 191 NPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQT 249
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1 Length = 231
Score = 96.7 bits (239), Expect = 3e-20 Identities = 45/62 (72%), Positives = 51/62 (82%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF LE KEKE+ANGRLAMLAFLGF++QHN+ GK P +NL HLADPWHNTIIQT+ Sbjct: 170 NPLNF-APLENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTI 228
Query: 182 QG 187 G Sbjct: 229 SG 230
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Length = 245
Score = 64.7 bits (156), Expect = 1e-10 Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%) Frame = +2
Query: 29 EYKEKEIANGRLAMLAFLGFVIQHNI-TGKSPVDNLFTHLADPWHNTI 169 E K KEI NGRLAMLAF+GF +Q + G P++NL THLADPWHN I Sbjct: 186 ELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Length = 270
Score = 62.8 bits (151), Expect = 5e-10 Identities = 30/47 (63%), Positives = 33/47 (70%) Frame = +2
Query: 29 EYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTI 169 E + KEI NGRLAMLA +G QH TG P+DNLF HLADP H TI Sbjct: 217 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1 Length = 270
Score = 62.8 bits (151), Expect = 5e-10 Identities = 30/47 (63%), Positives = 33/47 (70%) Frame = +2
Query: 29 EYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTI 169 E + KEI NGRLAMLA +G QH TG P+DNLF HLADP H TI Sbjct: 217 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1 Length = 246
Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%) Frame = +2
Query: 29 EYKEKEIANGRLAMLAFLGFVIQHNI-TGKSPVDNLFTHLADPWHNTI 169 E K KEI NGRLA+LA +GF +Q + G P++NL THLADPWHN I Sbjct: 187 ELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
>sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1 Length = 280
Score = 60.8 bits (146), Expect = 2e-09 Identities = 28/51 (54%), Positives = 36/51 (70%) Frame = +2
Query: 35 KEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTLQG 187 K KEI NGRLAM A LGF IQ +TG+ PV+NL HL+DP+ N ++ + G Sbjct: 222 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1 Length = 273
Score = 60.1 bits (144), Expect = 3e-09 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Frame = +2
Query: 2 NPFNF----PTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTI 169 NP F + E K KEI NGRLAMLA LG+ IQ +TG P NL HLADP +N + Sbjct: 207 NPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNV 266
Query: 170 IQTLQ 184 + +L+ Sbjct: 267 LTSLK 271
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2 Length = 265
Score = 58.9 bits (141), Expect = 8e-09 Identities = 27/45 (60%), Positives = 32/45 (71%) Frame = +2
Query: 29 EYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHN 163 E K KEI NGRLAM + GF +Q +TGK P++NLF HLADP N Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252
|
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943633|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_H09, 5' (277 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8RVI8|Q8RVI8_PINPS Putative chlorophyll a/b-binding protein ... 109 6e-23 tr|Q41039|Q41039_PINSY Lhca4 protein,Type 4 protein of light-har... 109 6e-23 tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of light-har... 109 6e-23 tr|B7FJY9|B7FJY9_MEDTR Putative uncharacterized protein OS=Medic... 107 2e-22 tr|A9NUC5|A9NUC5_PICSI Putative uncharacterized protein OS=Picea... 106 5e-22 tr|B6TNZ8|B6TNZ8_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ... 105 1e-21 tr|B6TFT2|B6TFT2_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ... 105 1e-21 tr|B4FV94|B4FV94_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ... 105 1e-21 tr|B6SZR1|B6SZR1_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ... 104 3e-21 tr|B4FS02|B4FS02_MAIZE Putative uncharacterized protein OS=Zea m... 104 3e-21 tr|A9PIX4|A9PIX4_POPJC Putative uncharacterized protein OS=Popul... 104 3e-21 tr|Q9LKC7|Q9LKC7_HORVU Chlorophyll a/b-binding protein (Fragment... 103 3e-21 tr|Q6XGX8|Q6XGX8_VITVI Chlorophyll a/b-binding protein (Fragment... 103 3e-21 tr|B5KU60|B5KU60_HELAN Chloroplast chlorophyll a/b binding prote... 103 3e-21 tr|A5AEI0|A5AEI0_VITVI Putative uncharacterized protein (Chromos... 103 3e-21 tr|Q9ZSU1|Q9ZSU1_ORYSA Chlorophyll a/b-binding protein presursor... 103 6e-21 tr|Q7M1K8|Q7M1K8_SOLLC Chlorophyll a/b-binding protein (cab-12) ... 103 6e-21 tr|Q6YWJ7|Q6YWJ7_ORYSJ Os08g0435900 protein OS=Oryza sativa subs... 103 6e-21 tr|A6MZA9|A6MZA9_ORYSI Chloroplast chlorophyll a-b binding prote... 103 6e-21 tr|A2YVJ1|A2YVJ1_ORYSI Putative uncharacterized protein OS=Oryza... 103 6e-21 tr|A2YVI8|A2YVI8_ORYSI Putative uncharacterized protein OS=Oryza... 103 6e-21 tr|Q7XAC6|Q7XAC6_BETVU Chlorophyll a /b binding protein OS=Beta ... 102 7e-21 tr|B1PDK1|B1PDK1_CAPAN Chloroplast chlorophyll a/b binding prote... 102 1e-20 tr|Q7M1K9|Q7M1K9_SOLLC Chlorophyll a/b-binding protein (cab-11) ... 102 1e-20 tr|Q40481|Q40481_TOBAC Light-harvesting chlorophyll a /b binding... 101 2e-20 tr|Q6SYB3|Q6SYB3_ORYSJ Chlorophyll a/b binding protein presusor ... 100 3e-20 tr|Q1H8L9|Q1H8L9_SOLTU Chlorophyll a/b binding protein OS=Solanu... 100 3e-20 tr|B8LS59|B8LS59_BAMOL Photosystem I light-harvesting complex ty... 100 4e-20 tr|Q9FPI3|Q9FPI3_ARATH AT3g47470 OS=Arabidopsis thaliana GN=AT3g... 99 8e-20 tr|Q9XF85|Q9XF85_ARATH Lhca5 protein OS=Arabidopsis thaliana GN=... 71 2e-11
>tr|Q8RVI8|Q8RVI8_PINPS Putative chlorophyll a/b-binding protein type 4 OS=Pinus pinaster PE=2 SV=1 Length = 251
Score = 109 bits (273), Expect = 6e-23 Identities = 49/62 (79%), Positives = 54/62 (87%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF S+E KEKE+ANGRLAMLAFLGFV+QHN+TGK P DNL HL+DPWHNTIIQTL Sbjct: 189 NPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
Query: 182 QG 187 QG Sbjct: 249 QG 250
>tr|Q41039|Q41039_PINSY Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I (Fragment) OS=Pinus sylvestris GN=Lhca4*1-2 PE=2 SV=1 Length = 244
Score = 109 bits (273), Expect = 6e-23 Identities = 49/62 (79%), Positives = 54/62 (87%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF S+E KEKE+ANGRLAMLAFLGFV+QHN+TGK P DNL HL+DPWHNTIIQTL Sbjct: 182 NPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 241
Query: 182 QG 187 QG Sbjct: 242 QG 243
>tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I OS=Pinus sylvestris GN=Lhca4*1-1 PE=2 SV=1 Length = 251
Score = 109 bits (273), Expect = 6e-23 Identities = 49/62 (79%), Positives = 54/62 (87%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF S+E KEKE+ANGRLAMLAFLGFV+QHN+TGK P DNL HL+DPWHNTIIQTL Sbjct: 189 NPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
Query: 182 QG 187 QG Sbjct: 249 QG 250
>tr|B7FJY9|B7FJY9_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 253
Score = 107 bits (268), Expect = 2e-22 Identities = 48/62 (77%), Positives = 53/62 (85%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKEIANGRLAMLAFLGF+IQHN+TGK P DNL HL+DPWHNTI+QTL Sbjct: 190 NPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHLSDPWHNTIVQTL 249
Query: 182 QG 187 G Sbjct: 250 SG 251
>tr|A9NUC5|A9NUC5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 251
Score = 106 bits (265), Expect = 5e-22 Identities = 47/62 (75%), Positives = 53/62 (85%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF S+E KEKE+ANGRLAMLAFLGFV+QHN+TGK P +NL HL+DPWHNTIIQT Sbjct: 189 NPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTF 248
Query: 182 QG 187 QG Sbjct: 249 QG 250
>tr|B6TNZ8|B6TNZ8_MAIZE Chlorophyll a-b binding protein 4 OS=Zea mays PE=2 SV=1 Length = 247
Score = 105 bits (261), Expect = 1e-21 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKE+ANGRLAMLAFLGF+IQHN+TGK P DNL HL+DPWHNTIIQT Sbjct: 186 NPLNFAPTLEAKEKELANGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 245
Query: 182 QG 187 G Sbjct: 246 SG 247
>tr|B6TFT2|B6TFT2_MAIZE Chlorophyll a-b binding protein 4 OS=Zea mays PE=2 SV=1 Length = 247
Score = 105 bits (261), Expect = 1e-21 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKE+ANGRLAMLAFLGF+IQHN+TGK P DNL HL+DPWHNTIIQT Sbjct: 186 NPLNFAPTLEAKEKELANGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 245
Query: 182 QG 187 G Sbjct: 246 SG 247
>tr|B4FV94|B4FV94_MAIZE Chlorophyll a-b binding protein 4 OS=Zea mays PE=2 SV=1 Length = 247
Score = 105 bits (261), Expect = 1e-21 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKE+ANGRLAMLAFLGF+IQHN+TGK P DNL HL+DPWHNTIIQT Sbjct: 186 NPLNFAPTLEAKEKELANGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 245
Query: 182 QG 187 G Sbjct: 246 SG 247
>tr|B6SZR1|B6SZR1_MAIZE Chlorophyll a-b binding protein 4 OS=Zea mays PE=2 SV=1 Length = 252
Score = 104 bits (259), Expect = 3e-21 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKE+ANGRLAMLAFL F+IQHN+TGK P DNL HL+DPWHNTIIQTL Sbjct: 191 NPLNFAPTLEAKEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 250
Query: 182 QG 187 G Sbjct: 251 SG 252
>tr|B4FS02|B4FS02_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 149
Score = 104 bits (259), Expect = 3e-21 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +2
Query: 2 NPFNFPTSLEYKEKEIANGRLAMLAFLGFVIQHNITGKSPVDNLFTHLADPWHNTIIQTL 181 NP NF +LE KEKE+ANGRLAMLAFL F+IQHN+TGK P DNL HL+DPWHNTIIQTL Sbjct: 88 NPLNFAPTLEAKEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 147
Query: 182 QG 187 G Sbjct: 148 SG 149
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