DK943642 |
Clone id |
YMU02A01NGRL0003_H18 |
Library |
YMU02 |
Length |
571 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_H18. 5' end sequence. |
Accession |
DK943642 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL163Contig1 |
Sequence |
GCGGACCAGAAGTGGGAACAGTCGAGTCGAACTTCGAAGGCGAGAAAGGTCGTGAGAAGC CATGGCCGCTGTTGCTGCTGCTCCTTCCTCTTGCGGCTCCGCGCTTGCTGCTTCAGCATC TTCTTCCTCTTCCTCACGCCGATTTTGTGTCGGGCGATCGCTGAGGGTGCCTTCTTACTC AGGGACTGGTCGATTTGCTCCTCTCTCTGTTCGAGCCACTACCTCGACCGAGGAGCCTGC TACCACCACCACTACCTCTACTCCCACTGTGTCCGTAACTTCAACCACTGAAGAGACATC TCTGCAGACAGACGAACTCATTGCGGACTTGAAAGCCAAGTGGGATGCTATTGAGAACAA GACAAATGTTTTGATTTATGGAGGAGGTGCCCTGGTCGCGTTGTGGTTTTCGTCAACAAT TGTTGGAGCTGTGAACTCAGTTCCGCTGCTTCCTAAGGTTTTGGAACTCGTTGGTCTTGG CTACAGTGGTTGGTTTGTGTACAGATACCTTCTTTTTAAGGAGAGCAGGAAGGAGCTAGC CGTGGNAAATTGAGGAGCTAAAGGGTAAGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O04616 |
Definition |
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana |
Align length |
80 |
Score (bit) |
136.0 |
E-value |
8.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943642|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_H18, 5' (571 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop... 136 8e-32 sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, ... 69 1e-11 sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strai... 44 6e-04 sp|Q28043|AVR2A_BOVIN Activin receptor type-2A OS=Bos taurus GN=... 32 1.7 sp|Q46VW9|MNMG_RALEJ tRNA uridine 5-carboxymethylaminomethyl mod... 31 3.8 sp|P38444|AVR2A_RAT Activin receptor type-2A OS=Rattus norvegicu... 30 6.5 sp|P27038|AVR2A_MOUSE Activin receptor type-2A OS=Mus musculus G... 30 6.5 sp|P27037|AVR2A_HUMAN Activin receptor type-2A OS=Homo sapiens G... 30 6.5 sp|Q6TEP1|F91A1_DANRE Protein FAM91A1 OS=Danio rerio GN=fam91a1 ... 30 8.4 sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343 OS=Homo sapiens GN... 30 8.5 sp|P18713|ZG17_XENLA Gastrula zinc finger protein XlCGF17.1 (Fra... 30 8.5 sp|A4WRE3|COBT_RHOS5 Nicotinate-nucleotide--dimethylbenzimidazol... 30 8.5
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1 Length = 164
Score = 136 bits (342), Expect = 8e-32 Identities = 62/80 (77%), Positives = 72/80 (90%) Frame = +2
Query: 302 LQTDELIADLKAKWDAIENKTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLELVGLG 481 + T+ELI DLK KWD +ENK+ VLIYGGGA+VA+W SS +VGA+NSVPLLPKV+ELVGLG Sbjct: 71 IDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLG 130
Query: 482 YSGWFVYRYLLFKESRKELA 541 Y+GWFVYRYLLFK SRKELA Sbjct: 131 YTGWFVYRYLLFKSSRKELA 150
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2 Length = 174
Score = 69.3 bits (168), Expect = 1e-11 Identities = 29/75 (38%), Positives = 50/75 (66%) Frame = +2
Query: 314 ELIADLKAKWDAIENKTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLELVGLGYSGW 493 E++ + W+ +++K + +VALW S+ ++ A++ +PL+P VLELVG+GY+GW Sbjct: 85 EIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGW 144
Query: 494 FVYRYLLFKESRKEL 538 F Y+ L+FK R+ L Sbjct: 145 FTYKNLVFKPDREAL 159
>sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=valS PE=3 SV=1 Length = 1014
Score = 43.9 bits (102), Expect = 6e-04 Identities = 26/58 (44%), Positives = 33/58 (56%) Frame = +2
Query: 359 KTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLELVGLGYSGWFVYRYLLFKESRK 532 KT L+ G LV L + + V++VP L E+VGLGYS WFV R LL +RK Sbjct: 846 KTIGLVIAG--LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARK 901
>sp|Q28043|AVR2A_BOVIN Activin receptor type-2A OS=Bos taurus GN=ACVR2A PE=2 SV=1 Length = 513
Score = 32.3 bits (72), Expect = 1.7 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +1
Query: 307 DRRTHCGLESQVGCY*EQDK---CFDLWRRCPGRVVVFVNNCW 426 DR G+ES CY ++DK CF W+ G + + CW Sbjct: 40 DRTNRTGVES---CYGDKDKRRHCFATWKNISGSIEIVKQGCW 79
>sp|Q46VW9|MNMG_RALEJ tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Ralstonia eutropha (strain JMP134) GN=mnmG PE=3 SV=1 Length = 646
Score = 31.2 bits (69), Expect = 3.8 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +2
Query: 338 KWDAIENKTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLE 466 +WDA K + + L + W + TI+ A ++VPLL K +E Sbjct: 463 RWDAFNRKRDAVSRETERLKSTWVNPTILPAEDAVPLLGKPIE 505
>sp|P38444|AVR2A_RAT Activin receptor type-2A OS=Rattus norvegicus GN=Acvr2a PE=1 SV=1 Length = 513
Score = 30.4 bits (67), Expect = 6.5 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +1
Query: 307 DRRTHCGLESQVGCY*EQDK---CFDLWRRCPGRVVVFVNNCW 426 DR G+E CY ++DK CF W+ G + + CW Sbjct: 40 DRTNQTGVEP---CYGDKDKRRHCFATWKNISGSIEIVKQGCW 79
>sp|P27038|AVR2A_MOUSE Activin receptor type-2A OS=Mus musculus GN=Acvr2a PE=1 SV=1 Length = 513
Score = 30.4 bits (67), Expect = 6.5 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +1
Query: 307 DRRTHCGLESQVGCY*EQDK---CFDLWRRCPGRVVVFVNNCW 426 DR G+E CY ++DK CF W+ G + + CW Sbjct: 40 DRTNQTGVEP---CYGDKDKRRHCFATWKNISGSIEIVKQGCW 79
>sp|P27037|AVR2A_HUMAN Activin receptor type-2A OS=Homo sapiens GN=ACVR2A PE=2 SV=1 Length = 513
Score = 30.4 bits (67), Expect = 6.5 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +1
Query: 307 DRRTHCGLESQVGCY*EQDK---CFDLWRRCPGRVVVFVNNCW 426 DR G+E CY ++DK CF W+ G + + CW Sbjct: 40 DRTNQTGVEP---CYGDKDKRRHCFATWKNISGSIEIVKQGCW 79
>sp|Q6TEP1|F91A1_DANRE Protein FAM91A1 OS=Danio rerio GN=fam91a1 PE=2 SV=2 Length = 831
Score = 30.0 bits (66), Expect = 8.4 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -3
Query: 398 RPGHLLHKSKHLSCSQ*HPTWLSSPQ*VRLSAEMSLQWLKLRTQWE 261 R G + K + +S Q HP+W S+P RL M Q K+ WE Sbjct: 291 RLGFAIKKGQVISPDQLHPSWKSAPSVNRLKGTMDPQ--KMLLSWE 334
>sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343 OS=Homo sapiens GN=ZNF343 PE=2 SV=1 Length = 599
Score = 30.0 bits (66), Expect = 8.5 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%) Frame = +1
Query: 193 ICSSLCSSHYLDRGACYHHH--------YLYSHCVRNFNH*RDISADRRTH 321 ICS C + DR HH Y+ S C R F+ ++S +RTH Sbjct: 270 ICSD-CGRSFKDRSTLIRHHRIHSMEKPYVCSECGRGFSQKSNLSRHQRTH 319
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4FR11 |
Definition |
tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
77 |
Score (bit) |
138.0 |
E-value |
2.0e-31 |
Report |
|