BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943643|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_H20, 5'
         (221 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48938|RT03_CHOCR Ribosomal protein S3, mitochondrial OS=Chon...    30   4.8  
sp|P36642|LEP4_PSEPU Type 4 prepilin-like proteins leader peptid...    29   8.2  

>sp|P48938|RT03_CHOCR Ribosomal protein S3, mitochondrial
           OS=Chondrus crispus GN=RPS3 PE=3 SV=1
          Length = 240

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -1

Query: 170 FQNWYWIDTNLLVMMTYIVKLLGLNTEAINYFSCSIERSECTLAYNF 30
           F+N++ I  N L +  +I++ + LN   INY+   + +++  L+  F
Sbjct: 29  FKNYFSIVNNQLNLQNFIIRYVKLNGFQINYYEWKMHKNKTFLSIYF 75


>sp|P36642|LEP4_PSEPU Type 4 prepilin-like proteins leader
           peptide-processing enzyme OS=Pseudomonas putida GN=pilD
           PE=3 SV=1
          Length = 288

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 84  YGLCIEAQQFHNVGHHDK*VSVYPVPILEYQLLR*RCFLCK 206
           + LC+ A Q    GH  +  +   +P+L Y  LR RC  CK
Sbjct: 62  FDLCLPASQCTQCGHRIR--AWENLPVLSYLALRGRCSACK 100

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943643|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_H20, 5'
         (221 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******