DK943645
Clone id YMU02A01NGRL0003_H22
Library
Length 230
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_H22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAAATGG
TGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCA
CGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGAC
CGATAGCGAAGCAGTACCGTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P09695
Definition sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169)
Align length 36
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943645|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_H22, 5'
(185 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str... 30 3.7
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra... 30 3.7
sp|P82600|PERC_AEDAE Chorion peroxidase OS=Aedes aegypti GN=pxt ... 30 4.8
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1 30 4.8
sp|Q6BBL6|CLD4_BOVIN Claudin-4 OS=Bos taurus GN=CLDN4 PE=2 SV=1 29 8.2

>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
AD169) GN=TRS1 PE=3 SV=1
Length = 788

Score = 30.0 bits (66), Expect = 3.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2

Query: 47 CTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
AD169) GN=IRS1 PE=3 SV=1
Length = 846

Score = 30.0 bits (66), Expect = 3.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2

Query: 47 CTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P82600|PERC_AEDAE Chorion peroxidase OS=Aedes aegypti GN=pxt
PE=1 SV=3
Length = 790

Score = 29.6 bits (65), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2

Query: 29 GEAVECCTPNGDSPVAG 79
G+A+ECCTPN +P+ G
Sbjct: 318 GQAIECCTPNCTAPLFG 334


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750

Score = 29.6 bits (65), Expect = 4.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2

Query: 2 ESDEGFVLLGEAVECCTPN----GDSPVAGSTASSRSNP 106
E ++GF L G AV C PN G++ V + AS NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|Q6BBL6|CLD4_BOVIN Claudin-4 OS=Bos taurus GN=CLDN4 PE=2 SV=1
Length = 209

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2

Query: 14 GFVLLGEAVEC--CTPNGDSPVAGSTASSRSNPSS 112
G ++LG A+ C C P D P + +++RS P+S
Sbjct: 172 GLLILGGALLCFNCPPRNDKPYSAKYSAARSAPAS 206


tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 49
Score (bit) 79.3
E-value 9.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943645|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_H22, 5'
(185 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 79 9e-14
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 79 9e-14
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 79 9e-14
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 79 9e-14
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 67 4e-10
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 50 4e-05
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 47 4e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 46 8e-04
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 44 0.001
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 41 0.026
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 41 0.026
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 41 0.026
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 41 0.026
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen... 41 0.026
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 41 0.026
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 40 0.045
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 40 0.059
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 40 0.059
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen... 40 0.077
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 40 0.077
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 39 0.13
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 39 0.17
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost... 38 0.29
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin... 37 0.38
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen... 37 0.65
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin... 36 0.85
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 35 1.5
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 35 1.9
tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Rumin... 35 2.5

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 79.3 bits (194), Expect = 9e-14
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +2

Query: 38 VECCTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 184
+ECCT +G+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 71


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 79.3 bits (194), Expect = 9e-14
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +2

Query: 38 VECCTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 184
+ECCT +G+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 77


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 79.3 bits (194), Expect = 9e-14
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +2

Query: 38 VECCTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 184
+ECCT +G+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 80


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 79.3 bits (194), Expect = 9e-14
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +2

Query: 38 VECCTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 184
+ECCT +G+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 75


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
(Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
Length = 52

Score = 67.0 bits (162), Expect = 4e-10
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +2

Query: 59 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 184
G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 42


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
Length = 44

Score = 50.4 bits (119), Expect = 4e-05
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -2

Query: 184 IGHSGIFSLTRWSSLIHTGFCVPHATWVGA 95
IGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 15 IGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00011927001 PE=4 SV=1
Length = 60

Score = 47.4 bits (111), Expect = 4e-04
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +2

Query: 2 ESDEGFVLLGEAVECCTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQR 145
ES++ LL EA ECCT +G+SPVA S S S+ SSMGH + +R
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010999001 PE=4 SV=1
Length = 73

Score = 46.2 bits (108), Expect = 8e-04
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +2

Query: 2 ESDEGFVLLGEAVECCTPNGDSPVAGSTASSRSNPSSMGHAKSRVNQR 145
ES++ LL EA ECCT +G+SPVA S S S+ +SMGH + +R
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
PE=4 SV=1
Length = 390

Score = 43.9 bits (102), Expect(2) = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2

Query: 184 IGHSGIFSLTRWSSLIHTGFCVPHAT 107
I H +FSL RWS LIHTGF VPHAT
Sbjct: 247 ISHPEVFSLARWSLLIHTGFHVPHAT 272



Score = 21.6 bits (44), Expect(2) = 0.001
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3

Query: 90 LAVLPATGLSPFGVQH 43
L +L ATG SP VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein
OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3
SV=1
Length = 1546

Score = 44.3 bits (103), Expect = 0.003
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2

Query: 175 SGIFSLTRWSSLIHTGFCVPHAT 107
SG+FSL RWS LIHTGF VPHAT
Sbjct: 666 SGVFSLARWSLLIHTGFHVPHAT 688