DK943648
Clone id YMU02A01NGRL0003_I02
Library
Length 279
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_I02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCTGCCTCTGCGTGAAGCTCACCTTGCCCAACCTATCGCTCACCACCTGCCCTGGCCTCA
GCATCGACCTCGCCCGCATCATCTTCGGCTCCAACGGAAGCTGCGTCTGATCTCCTACAT
CGTCAGCCTGCAGCAGCTCCATGCAGTTCTGTTCATGTCTTGTTGTATTTCTGTATGCGG
ATTTTATGTTCTCCGCCATGCTAGCTCGTTTCTGTACTACCTTGTAGATTTGGATTGATG
CTTTGTTCTCTGGAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9UJ04
Definition sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 OS=Homo sapiens
Align length 71
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943648|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_I02, 5'
(253 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 O... 31 2.2
sp|A7N4V5|Y6516_VIBHB Putative phosphotransferase VIBHAR_06516 O... 29 6.3
sp|Q9Z1K7|APC2_MOUSE Adenomatous polyposis coli protein 2 OS=Mus... 29 6.3
sp|Q6ZPF4|FMNL3_MOUSE Formin-like protein 3 OS=Mus musculus GN=F... 29 8.3

>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4
OS=Homo sapiens GN=TSPYL4 PE=2 SV=2
Length = 414

Score = 30.8 bits (68), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = -1

Query: 250 ENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMELLQADD--------VGDQTQLP 95
E A+++ KVVQK +A +K R NCM+ L+A D D+ L
Sbjct: 168 EAGAAMEEKKVVQKEKKVAGGVKEETRPRAPKINNCMDSLEAIDQELSNVNAQADRAFLQ 227

Query: 94 LEPKMMRARSM 62
LE K R R +
Sbjct: 228 LERKFGRMRRL 238


>sp|A7N4V5|Y6516_VIBHB Putative phosphotransferase VIBHAR_06516
OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=VIBHAR_06516 PE=3 SV=1
Length = 278

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1

Query: 118 VGDQTQLPLEPKMMRARSMLRPGQVVSDRLGKVSFT 11
V D Q+ +PKM R+RS+ + DR+ + +T
Sbjct: 101 VQDDIQMEPQPKMQRSRSVSKDSDTYFDRIAAIEYT 136


>sp|Q9Z1K7|APC2_MOUSE Adenomatous polyposis coli protein 2 OS=Mus
musculus GN=Apc2 PE=1 SV=1
Length = 2274

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1

Query: 151 QNCMELLQADDVGDQTQLPLEPKMMRA 71
+ C + LQA D G +T +P+EP++ +A
Sbjct: 381 ETCWDWLQARDSGTETPVPIEPQICQA 407


>sp|Q6ZPF4|FMNL3_MOUSE Formin-like protein 3 OS=Mus musculus
GN=Fmnl3 PE=2 SV=2
Length = 1028

Score = 28.9 bits (63), Expect = 8.3
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = -1

Query: 232 QIYKVVQKRASMAENIKSAYRNTTRHEQNCMELLQADDVGDQTQLPLEPKMMRARSMLRP 53
++ K + +R E+IK Y NT+ L++ + Q + LEP AR +
Sbjct: 425 ELEKQLLQREKELESIKETYENTSNQVHTLRRLIKEKEEAFQRRCHLEPS---ARGLESM 481

Query: 52 GQVVSDRLGKVSFTQ 8
G R+G T+
Sbjct: 482 GGEALARVGPTELTE 496


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943648|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_I02, 5'
(253 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******