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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943655
Clone id YMU02A01NGRL0003_I11
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_I11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGAACAAACAGTTAAAAAACCACAAAATTAGCATAATTCCTTGACAGGAACTGACAAAAT
TTGACATATTAATAATCTACAATTTTTATTCCCCCCGGAAATATAGAAAAATTGGGTGAA
ATTTGAAAATATTTTGTATAACAGTTATAGTATGGATAATCAGTGACGTAATCGCCTTTA
TCAATCAACTTCAAGCAATTGGTGTATGTTAATCTATTTTTGGAAATATTGAGTTTAAGG
ATGAAATAACCTCCCTATTAGAACAAAGATATATCCCAAATAAGTATTTAAATGTTATTT
CACGTCAATGTAAGAATTTGACCGATCTTAAAGCATATTGTGAGAGCGCAAGATACAGGG
AATTTCTTAGACTTCCATACCACAAATTTAGAAAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id P58692
Definition sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120)
Align length 27
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943655|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_I11, 5'
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp. ...    30   3.8  
sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase OS=T...    30   4.9  
sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase OS=T...    30   4.9  
sp|P17830|FIMBC_DICNO Fimbrial assembly protein, serogroups C1 a...    29   6.4  
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavir...    29   8.4  
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavir...    29   8.4  
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronaviru...    29   8.4  
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronav...    29   8.4  
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronav...    29   8.4  
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavi...    29   8.4  

>sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp.
           (strain PCC 7120) GN=asnS PE=3 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 233 LNISKNRLTYTNCLKLIDKGDYVTDYP 153
           +N    RLTYT+ +KL++K D   +YP
Sbjct: 301 INNQFERLTYTDAIKLLEKADVKFEYP 327


>sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase
           OS=Thermoanaerobacter sp. (strain X514) GN=mtnA PE=3
           SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 225 NIEFKDEITSLLEQRYIPNKY 287
           +IEFK+E+  L++QR +PN Y
Sbjct: 6   SIEFKNEVLYLIDQRKLPNSY 26


>sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase
           OS=Thermoanaerobacter pseudethanolicus (strain ATCC
           33223 / 39E) GN=mtnA PE=3 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 225 NIEFKDEITSLLEQRYIPNKY 287
           +IEFK+E+  L++QR +PN Y
Sbjct: 6   SIEFKNEVLYLIDQRKLPNSY 26


>sp|P17830|FIMBC_DICNO Fimbrial assembly protein, serogroups C1 and
           C2 (Fragment) OS=Dichelobacter nodosus GN=fimB PE=4 SV=1
          Length = 131

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 135 KIFSNFTQFFYISGGNKNCRLLICQILSVPVKEL 34
           KI  NF  FF ISG +  C  L+  ILS P K L
Sbjct: 42  KIMGNFKLFFLISGIDVCCGPLLTFILSNPQKRL 75


>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
            (strain JHM) GN=1a PE=1 SV=1
          Length = 4474

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 233
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3132 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3191

Query: 234  FKDEITSLLEQRYI 275
            F  EI+ ++  +++
Sbjct: 3192 FPSEISVVMHLQWL 3205


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
            (strain A59) GN=1a PE=1 SV=1
          Length = 4468

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 233
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3129 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3188

Query: 234  FKDEITSLLEQRYI 275
            F  EI+ ++  +++
Sbjct: 3189 FPSEISVVMHLQWL 3202


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
            (strain 2) GN=1a PE=3 SV=1
          Length = 4416

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 233
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3075 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3134

Query: 234  FKDEITSLLEQRYI 275
            F  EI+ ++  +++
Sbjct: 3135 FPSEISVVMHLQWL 3148


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
            (strain JHM) GN=rep PE=1 SV=1
          Length = 7180

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 233
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3132 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3191

Query: 234  FKDEITSLLEQRYI 275
            F  EI+ ++  +++
Sbjct: 3192 FPSEISVVMHLQWL 3205


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain A59) GN=rep PE=1 SV=1
          Length = 7176

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 233
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3129 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3188

Query: 234  FKDEITSLLEQRYI 275
            F  EI+ ++  +++
Sbjct: 3189 FPSEISVVMHLQWL 3202


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain 2) GN=rep PE=3 SV=1
          Length = 7124

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 66   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 233
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3075 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3134

Query: 234  FKDEITSLLEQRYI 275
            F  EI+ ++  +++
Sbjct: 3135 FPSEISVVMHLQWL 3148
tr_hit_id A2DG76
Definition tr|A2DG76|A2DG76_TRIVA Beige/BEACH domain containing protein OS=Trichomonas vaginalis G3
Align length 39
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943655|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_I11, 5'
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2DG76|A2DG76_TRIVA Beige/BEACH domain containing protein OS=...    35   1.9  
tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus GN=145R PE=4 SV=1        33   9.3  
tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein OS=Arcob...    33   9.3  
tr|A2TWX1|A2TWX1_9FLAO Putative uncharacterized protein OS=Polar...    33   9.3  

>tr|A2DG76|A2DG76_TRIVA Beige/BEACH domain containing protein
           OS=Trichomonas vaginalis G3 GN=TVAG_163990 PE=4 SV=1
          Length = 1219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -2

Query: 126 SNFTQFFYISGGNKNCRLLICQILSVPVKELC*FCGFLT 10
           SNFT  F I G  K CRL++C+ L+    EL  FC FLT
Sbjct: 240 SNFTPLFTILGKEK-CRLILCK-LNTEYYELAFFCSFLT 276


>tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus GN=145R PE=4 SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 81  NFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQLQAIGV 206
           N  +  K R I   L +   TV++W+  +++ FIN LQ++G+
Sbjct: 218 NCKNKNKTRSIKIILTVVVFTVVLWVPFNIVLFINSLQSVGL 259


>tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein
           OS=Arcobacter butzleri (strain RM4018) GN=Abu_0202 PE=4
           SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 216 IFGNIEFKDEITSLLEQRYIPNKYLNVISRQCKNLTDLK 332
           I+GN  FK EI  +L+   I     NVI ++  NL DLK
Sbjct: 5   IYGNQRFKKEIYKILDSSQIKKIDNNVIIKEISNLNDLK 43


>tr|A2TWX1|A2TWX1_9FLAO Putative uncharacterized protein
           OS=Polaribacter sp. MED152 GN=MED152_00310 PE=4 SV=1
          Length = 1576

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 230 NISKNRLTYTNCLKLIDKGDYVTDYPYYNCYTKYFQISPNFSIFPGGIKIVDY*YV 63
           N   N +T+T        G  VT  P YN  T  F ++PN S+ PG + +++  Y+
Sbjct: 577 NFIDNGITFTELRIQQASGPTVTINPNYNGETDTFLLAPNNSLAPGEVVVLELFYL 632