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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943667
Clone id YMU02A01NGRL0003_J01
Library
Length 299
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_J01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTTTCTATGGTTTGGTTTTTCTACTTGGCGAGTTGTTGGTCCTGTGGCAGTCAAGTCGA
AGAGCTCTAATTGCTATGTATTTGCGAGGGTTGCTCCCTGTAAAGCCGTTATGATGTGGT
TATGGATGAAATGTAAAGCCCTTATGAGGTGGTTTTTGGATGTTGTGGTTTAGGGATGTA
CTGGGATCCTCCTGGCTTAGTATGAGCAGGAGTTGGTTGTGATTCATTTTGACTTAATTC
AATATACTCACAGTTGTGAGTTCTGCTATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P29775
Definition sp|P29775|ETS4_DROME DNA-binding protein D-ETS-4 OS=Drosophila melanogaster
Align length 25
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943667|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_J01, 5'
         (270 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29775|ETS4_DROME DNA-binding protein D-ETS-4 OS=Drosophila m...    29   6.4  
sp|Q8BJI4|PO6F2_MOUSE POU domain, class 6, transcription factor ...    29   8.4  

>sp|P29775|ETS4_DROME DNA-binding protein D-ETS-4 OS=Drosophila
           melanogaster GN=Ets98B PE=2 SV=3
          Length = 518

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 231 QNESQPTPAHTKPGGSQYIPKPQHP 157
           Q + QPT  +T P   Q IP P +P
Sbjct: 78  QQQQQPTAPYTNPSSHQLIPPPAYP 102


>sp|Q8BJI4|PO6F2_MOUSE POU domain, class 6, transcription factor 2
           OS=Mus musculus GN=Pou6f2 PE=2 SV=1
          Length = 691

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 225 ESQPTPAHTKPGGSQYIPKP 166
           +SQPTP H  P  SQ +P P
Sbjct: 217 QSQPTPPHQPPPASQQLPAP 236
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943667|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_J01, 5'
         (270 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******