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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943673
Clone id YMU02A01NGRL0003_J08
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_J08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTCCCAGAATTGCCCACCATGCCAGCAAGCCCATATCCACCTGCTCACCAACCACAGCA
GTTTTATCCTCCTTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCAACTGATCGTAGGTCTCGCTCTCTTTCTCTGAGCCTAATAGACACTCACT
CAACGTCCTCCCCCCCATGCAGCATATTACATGCGCCATCAACTCGACTGGACCTTCTCA
ACCACCGAGCCTTTAACCCTGTCCCCCACCTGTGGTTTTGCAAGCAACCCCACTCTCTCT
CGACCACACCCCACATTCGTTTTCCAACCATGAGCAAATTGGCGGCTTCCACCTTGTTAA
ATGTAGTACTCATCTGCCATTCTCTGTTTTTTTATCCACGCTATTTTGGTTTACTCTTAT
CCGTCTGTTCCTTAACAAGCAACAGCAGCTATTCTCTCCCTCTTCTCTCTCTCTCTCTCT
CTAATTTTTCTCACCACCACCAGCGTTCAGAGCTTGAAATCCATTTTTGAGGAGAACCCG
GAAATTTATGAAGCATGACAA
■■Homology search results ■■ -
sp_hit_id Q9TU53
Definition sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris
Align length 72
Score (bit) 31.6
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943673|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_J08, 5'
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1     32   2.8  
sp|P13983|EXTN_TOBAC Extensin OS=Nicotiana tabacum GN=HRGPNT3 PE...    26   3.9  
sp|Q01W31|IF2_SOLUE Translation initiation factor IF-2 OS=Soliba...    31   4.7  
sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus ...    30   8.1  
sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=...    30   8.1  
sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=...    30   8.1  

>sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1
          Length = 3620

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
 Frame = -1

Query: 426 RRIRVNQNSVDKKT------ENGR*VLHL---------TRWKPPICSWLENECGVWSR-- 298
           R+ +  Q +VDKK       +NG   L+L         ++WK P+CS   NEC ++S   
Sbjct: 119 RKFQSLQQTVDKKVCSSNPCQNGGTCLNLHDSFFCICPSQWKGPLCSVDVNECQIYSGTP 178

Query: 297 ---ESGVACKTT 271
              ++G  C+ T
Sbjct: 179 LGCQNGATCENT 190


>sp|P13983|EXTN_TOBAC Extensin OS=Nicotiana tabacum GN=HRGPNT3 PE=2
           SV=1
          Length = 620

 Score = 26.2 bits (56), Expect(2) = 3.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 5   PELPTMPASPYPPAHQPQQFYPP 73
           P  PT   SP PPA+ P   Y P
Sbjct: 310 PPTPTPTFSPPPPAYSPPPTYSP 332



 Score = 23.5 bits (49), Expect(2) = 3.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 189 SPPCSILHAPSTRLDLLNHRAFNPVPHLWFCKQPHSLSTTPHIRFP 326
           SPP +    P T L L +   ++P P ++    P S S  P    P
Sbjct: 325 SPPPTYSPPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLP 370


>sp|Q01W31|IF2_SOLUE Translation initiation factor IF-2
           OS=Solibacter usitatus (strain Ellin6076) GN=infB PE=3
           SV=1
          Length = 1001

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 14  PTMPASPYPPAHQPQQFYPP 73
           P MPA P PPAH P    PP
Sbjct: 177 PAMPARPEPPAHHPPSQTPP 196


>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus
           GN=Rbm10 PE=2 SV=1
          Length = 852

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 350 GSRQF-AHGWKTNVGCGRERVGLLAKPQVGDRVKGS 246
           GSR   A GWK   G GR++ G++   +   RV+GS
Sbjct: 784 GSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGS 819


>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus
           GN=Rbm10 PE=1 SV=1
          Length = 930

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 350 GSRQF-AHGWKTNVGCGRERVGLLAKPQVGDRVKGS 246
           GSR   A GWK   G GR++ G++   +   RV+GS
Sbjct: 862 GSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGS 897


>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens
           GN=RBM10 PE=1 SV=3
          Length = 930

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 350 GSRQF-AHGWKTNVGCGRERVGLLAKPQVGDRVKGS 246
           GSR   A GWK   G GR++ G++   +   RV+GS
Sbjct: 862 GSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGS 897
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943673|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_J08, 5'
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******