NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943676
Clone id YMU02A01NGRL0003_J11
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_J11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTGAGTCCTTATCCGTAAAAAAGTCCAAGGATATTGCGTCTATCGAGGAAATTTAAACAT
CAGAGACAAAAAAGTTGAGCTACGTTAGGGCGAATAAGCTAGCTGCACGACTGGACGCGT
CACGTTATCAGCGGCATGTTAAATGCAGAGAACTTTCCGTCGTCTTAGATGCTGCAATGG
AGGGAACTGAAGATGACATGAACATTCCGCATGTTACTACTCTAGGATTAATGAACGGCA
TGCTGCTTGTATACCGATTTTGATAATGAAGATGATGTGCTCGTTTTCAACAACTACACT
CGTTTTGCTCTCATTTTTTGTCAGATCGACTGCATATATCTATATCAGTCAGTTCTGAAG
CATGCCACTTTGAGGTGGA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943676|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_J11, 5'
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q29C38
Definition tr|Q29C38|Q29C38_DROPS GA13792 OS=Drosophila pseudoobscura pseudoobscura
Align length 35
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943676|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_J11, 5'
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q29C38|Q29C38_DROPS GA13792 OS=Drosophila pseudoobscura pseud...    35   1.4  
tr|B4GNM6|B4GNM6_DROPE GL13458 OS=Drosophila persimilis GN=GL134...    35   1.4  
tr|Q54J31|Q54J31_DICDI Putative uncharacterized protein OS=Dicty...    33   9.1  

>tr|Q29C38|Q29C38_DROPS GA13792 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA13792 PE=4 SV=2
          Length = 666

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 93  NKLAARLDASRYQRHVKCRELSVVLDAAMEGTEDD 197
           +K   R+  S YQ+  +CREL  +L+ ++E  E+D
Sbjct: 601 SKTLCRIATSNYQKRTRCRELQAILEKSLENEEED 635


>tr|B4GNM6|B4GNM6_DROPE GL13458 OS=Drosophila persimilis GN=GL13458
           PE=4 SV=1
          Length = 666

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 93  NKLAARLDASRYQRHVKCRELSVVLDAAMEGTEDD 197
           +K   R+  S YQ+  +CREL  +L+ ++E  E+D
Sbjct: 601 SKTLCRIATSNYQKRTRCRELQAILEKSLENEEED 635


>tr|Q54J31|Q54J31_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0187894 PE=4 SV=1
          Length = 907

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 256 DFDNEDDVLVFNNYTRFALIFCQIDCIYLYQS 351
           D+DN+D+++  NNY +FA+   +  CI +  S
Sbjct: 315 DYDNDDEIIKINNYLKFAIKKLEYGCIKIIVS 346