DK943687
Clone id YMU02A01NGRL0003_K01
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_K01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCGTT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCAGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAA
AAGAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943687|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K01, 5'
(466 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3
sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Des... 30 5.1
sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Des... 30 5.1
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.2

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +1

Query: 247 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 393
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase
OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
GN=dapL PE=3 SV=1
Length = 388

Score = 30.0 bits (66), Expect = 5.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3

Query: 165 NLVTRSFQELGKIVTKQNCFGTPRNTWFNFYFRGDK*R 278
+ VTR QE G +VT N FGTP +F D R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377


>sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase
OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB 8303) GN=dapL PE=3 SV=1
Length = 388

Score = 30.0 bits (66), Expect = 5.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3

Query: 165 NLVTRSFQELGKIVTKQNCFGTPRNTWFNFYFRGDK*R 278
+ VTR QE G +VT N FGTP +F D R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.2
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1

Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 381
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 34.3
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943687|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K01, 5'
(466 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 34 3.1
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.4

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 34.3 bits (77), Expect = 3.1
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -3

Query: 188 LK*TSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
LK ++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1

Query: 238 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 402
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796