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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943694
Clone id YMU02A01NGRL0003_K08
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_K08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAGATCGTTAGTTCCTAGTAGAGATGGGCACGGACCCCTTCGAAATTCATCCCTAGCAAA
GTGATGTTTCTTGGGATCGACCTTTAATTTGTGGTGTTATGTCTCAACAACGAAAAGCTC
AAACTGGGGACCCTTGTTGTATCTATGTAAAGTACTCGGATTGAATCTGCTGGCGAGGAG
GCATAGCTGTGTAAGCTGGGCAAGGCATCGATGATATTGACCTGCAGTTGCGACTGGAGA
TGTGTAACAATGTAGGTGTAACAAAGGAGGTGGGATTCTATACTTGACAAAACCTGCCAA
GCAATTGTGGAAGTTCTGATGCCATTCGCCATAGTGAGTGGCCCGAGACTGTCAATGTAC
CTCATACTGCTGCTTTGTACAGCTGAGTTTTTAGGCAAAGGTTGGATATGTTGAAAGTAG
CTTGTACATTGCTAAATTCTTTTTCTGAAGGATTTATTGTTGTATTTTACATTTCTTTAA
AACACAAATGCAAGCCCAGGTCTAGTGACGTTTTGTATTGATATAATTGTGGCATTATTC
TTAATTTGTTTTCTGAGGTAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8N7Z5
Definition sp|Q8N7Z5|ANR31_HUMAN Ankyrin repeat domain-containing protein 31 OS=Homo sapiens
Align length 31
Score (bit) 35.4
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943694|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K08, 5'
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N7Z5|ANR31_HUMAN Ankyrin repeat domain-containing protein 3...    35   0.19 
sp|Q6GII7|AROD_STAAR 3-dehydroquinate dehydratase OS=Staphylococ...    32   2.1  
sp|A8Z1D4|AROD_STAAT 3-dehydroquinate dehydratase OS=Staphylococ...    32   2.7  
sp|A6QFB2|AROD_STAAE 3-dehydroquinate dehydratase OS=Staphylococ...    32   2.7  
sp|Q5HHL2|AROD_STAAC 3-dehydroquinate dehydratase OS=Staphylococ...    32   2.7  
sp|Q2G002|AROD_STAA8 3-dehydroquinate dehydratase OS=Staphylococ...    32   2.7  
sp|Q2FIJ1|AROD_STAA3 3-dehydroquinate dehydratase OS=Staphylococ...    32   2.7  
sp|Q8NXI0|AROD_STAAW 3-dehydroquinate dehydratase OS=Staphylococ...    31   3.6  
sp|Q6GB27|AROD_STAAS 3-dehydroquinate dehydratase OS=Staphylococ...    31   3.6  
sp|Q2YWJ9|AROD_STAAB 3-dehydroquinate dehydratase OS=Staphylococ...    31   3.6  
sp|Q9ZPY2|LAC6_ARATH Laccase-6 OS=Arabidopsis thaliana GN=LAC6 P...    31   4.7  
sp|P43248|MSH2_DROME DNA mismatch repair protein spellchecker 1 ...    30   6.1  
sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Hom...    30   8.0  
sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae GN=MDN1...    30   8.0  

>sp|Q8N7Z5|ANR31_HUMAN Ankyrin repeat domain-containing protein 31
            OS=Homo sapiens GN=ANKRD31 PE=2 SV=2
          Length = 1873

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -1

Query: 247  LHISSRNCRSISSMPCPAYTAMPPRQQIQSE 155
            + +  +NCR+++S+PC +   +PPR +I SE
Sbjct: 1425 ISLKIQNCRNVTSLPCLSLRKLPPRSEISSE 1455


>sp|Q6GII7|AROD_STAAR 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain MRSA252) GN=aroD PE=1 SV=1
          Length = 238

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = -3

Query: 377 QSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALP 198
           Q ++  Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  II    
Sbjct: 79  QFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVII---- 130

Query: 197 SLHSYASSP 171
           S H++ S+P
Sbjct: 131 SHHNFESTP 139


>sp|A8Z1D4|AROD_STAAT 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain USA300 / TCH1516) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 377 QSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALP 198
           Q ++  Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    
Sbjct: 79  QFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI---- 130

Query: 197 SLHSYASSP 171
           S H++ S+P
Sbjct: 131 SHHNFESTP 139


>sp|A6QFB2|AROD_STAAE 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain Newman) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 377 QSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALP 198
           Q ++  Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    
Sbjct: 79  QFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI---- 130

Query: 197 SLHSYASSP 171
           S H++ S+P
Sbjct: 131 SHHNFESTP 139


>sp|Q5HHL2|AROD_STAAC 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain COL) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 377 QSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALP 198
           Q ++  Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    
Sbjct: 79  QFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI---- 130

Query: 197 SLHSYASSP 171
           S H++ S+P
Sbjct: 131 SHHNFESTP 139


>sp|Q2G002|AROD_STAA8 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain NCTC 8325) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 377 QSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALP 198
           Q ++  Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    
Sbjct: 79  QFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI---- 130

Query: 197 SLHSYASSP 171
           S H++ S+P
Sbjct: 131 SHHNFESTP 139


>sp|Q2FIJ1|AROD_STAA3 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain USA300) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 377 QSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALP 198
           Q ++  Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    
Sbjct: 79  QFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI---- 130

Query: 197 SLHSYASSP 171
           S H++ S+P
Sbjct: 131 SHHNFESTP 139


>sp|Q8NXI0|AROD_STAAW 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain MW2) GN=aroD PE=1 SV=1
          Length = 238

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 359 YIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALPSLHSYA 180
           Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    S H++ 
Sbjct: 85  YLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI----SHHNFE 136

Query: 179 SSP 171
           S+P
Sbjct: 137 STP 139


>sp|Q6GB27|AROD_STAAS 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain MSSA476) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 359 YIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALPSLHSYA 180
           Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    S H++ 
Sbjct: 85  YLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI----SHHNFE 136

Query: 179 SSP 171
           S+P
Sbjct: 137 STP 139


>sp|Q2YWJ9|AROD_STAAB 3-dehydroquinate dehydratase OS=Staphylococcus
           aureus (strain bovine RF122 / ET3-1) GN=aroD PE=3 SV=1
          Length = 238

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 359 YIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALPSLHSYA 180
           Y++ +  L   NGI    I WQ    IE H      I+THLQ   +  +I    S H++ 
Sbjct: 85  YLNLISDLANINGIDMIDIEWQADIDIEKH----QRIITHLQQYNKEVVI----SHHNFE 136

Query: 179 SSP 171
           S+P
Sbjct: 137 STP 139
tr_hit_id A8B926
Definition tr|A8B926|A8B926_GIALA Putative uncharacterized protein OS=Giardia lamblia ATCC 50803
Align length 91
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943694|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K08, 5'
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8B926|A8B926_GIALA Putative uncharacterized protein OS=Giard...    39   0.14 
tr|Q2BWR0|Q2BWR0_9GAMM Putative uncharacterized protein OS=Photo...    35   2.1  
tr|Q6BTP5|Q6BTP5_DEBHA DEHA2C16918p OS=Debaryomyces hansenii GN=...    35   2.1  
tr|Q4SA30|Q4SA30_TETNG Chromosome 12 SCAF14692, whole genome sho...    35   2.7  
tr|B6NJX1|B6NJX1_BRAFL Putative uncharacterized protein (Fragmen...    35   3.6  
tr|B6LEL2|B6LEL2_BRAFL Putative uncharacterized protein (Fragmen...    35   3.6  
tr|A0ZH11|A0ZH11_NODSP ATP-binding protein of ABC transporter OS...    34   4.6  
tr|A8AHH9|A8AHH9_CITK8 Putative uncharacterized protein OS=Citro...    34   6.1  

>tr|A8B926|A8B926_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_7350 PE=4 SV=1
          Length = 1539

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
 Frame = -3

Query: 314 TSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALPSLHSY--ASSPADSIRVLYID 141
           T+ +A+ +LSS+ES+ + ++Y   H Q  L  ++   L +L     AS P D    +Y+D
Sbjct: 725 TTQLAYSLLSSLESNPM-FSYYYPHAQKILIASLSSLLVNLLYIFTASEPGDFRTSIYMD 783

Query: 140 TTRVPSLSFSLLRH-NTTN*RSIPRNITLLG 51
            T +      LLRH + T+ RS    I +LG
Sbjct: 784 MTNISDTLQRLLRHFSLTSFRSSGSEIVMLG 814


>tr|Q2BWR0|Q2BWR0_9GAMM Putative uncharacterized protein
           OS=Photobacterium sp. SKA34 GN=SKA34_01067 PE=4 SV=1
          Length = 155

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
 Frame = -3

Query: 389 NSAVQSSSMRYIDSLGPLT---MANGIRTSTIAWQVLSSIESHL---LCYTYIVTHLQSQ 228
           NS + S   + ID++  LT   +    R   IA++++ S  S +    CY +    L++ 
Sbjct: 43  NSIIASVRFKTIDNIQLLTGMLVIPEYRLQGIAYKLIESCRSQINQQACYCFAFQELEAF 102

Query: 227 LQVNIIDALPS----------LHSYASSPADSIRVLYIDTTRVPSLSFSLLRH 99
            Q +    + S           H YA+S  + I +L+IDT    S+S ++ RH
Sbjct: 103 YQKSGFKTINSEILPNNIKQRFHRYANSGKNLIPMLFIDTLTSESMSKNISRH 155


>tr|Q6BTP5|Q6BTP5_DEBHA DEHA2C16918p OS=Debaryomyces hansenii
           GN=DEHA2C16918g PE=4 SV=2
          Length = 810

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
 Frame = -3

Query: 557 LRKQIKNNATIISIQNVTRPGLAF-------VF*RNVKYNNKSFRKRI*QCTSYFQHIQP 399
           L + +KN  TII +   T+P L +       V+   ++Y+ K F       TSYF++I P
Sbjct: 64  LEESLKNKNTIIVVPP-TKPQLFYSPLKTGLVYDVRMRYHAKIF-------TSYFEYIDP 115

Query: 398 LPKN--------------SAVQSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHL 267
            P++                +Q SS+  ID +GPL +   IR ++    +    E HL
Sbjct: 116 HPEDPRRIYRIYKKLAEAGLIQDSSLSGIDEIGPLMVKIPIREASAEEILEVHSEEHL 173


>tr|Q4SA30|Q4SA30_TETNG Chromosome 12 SCAF14692, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00021630001 PE=3 SV=1
          Length = 540

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 28/102 (27%), Positives = 40/102 (39%)
 Frame = -3

Query: 410 HIQPLPKNSAVQSSSMRYIDSLGPLTMANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQS 231
           H  P      V+ S     D +    +A G RT  +    +    SH L  T     + S
Sbjct: 292 HALPTSPEPGVKYSPQMLCDGVTSARLAGGDRTGCLVVSPVQLEPSHTLLDTQNPKQVSS 351

Query: 230 QLQVNIIDALPSLHSYASSPADSIRVLYIDTTRVPSLSFSLL 105
              +  +  L SLHS ++SPA S  ++      V SL  S L
Sbjct: 352 GGPLPPVSTLTSLHSLSASPASSPSLIMASLPSVMSLGESSL 393


>tr|B6NJX1|B6NJX1_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_230945 PE=4 SV=1
          Length = 148

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 86  NLWCYVSTTKSSNWGPLLYLCKVLGLNLLARRHS 187
           N +CY+     ++WG   YLCK++G NL + +++
Sbjct: 9   NNYCYMLVKHKASWGEANYLCKIMGANLASVKNA 42


>tr|B6LEL2|B6LEL2_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_204756 PE=4 SV=1
          Length = 96

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 86  NLWCYVSTTKSSNWGPLLYLCKVLGLNLLARRHS 187
           N +CY+     ++WG   YLCK++G NL + +++
Sbjct: 9   NNYCYMLVKHKASWGEANYLCKIMGANLASVKNA 42


>tr|A0ZH11|A0ZH11_NODSP ATP-binding protein of ABC transporter
           OS=Nodularia spumigena CCY 9414 GN=N9414_08724 PE=3 SV=1
          Length = 576

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
 Frame = -3

Query: 338 LTMANGIRTSTIAWQV--LSSIESHLLC----------YTYIVTHLQSQLQVNIIDALPS 195
           + +ANG+R  T+ WQ+   + + S L C          Y++ V H  ++L   I D    
Sbjct: 68  VVLANGLRLLTLRWQLRFAAMVSSDLSCEVYRRTLLQPYSFHVRHSSNEL---IADITQD 124

Query: 194 LHSYASSPADSIRVLYIDTTRVPSLSFSLLRHN 96
           L S +SS   ++  L +++  V +L  S+L  N
Sbjct: 125 LQSVSSSVLPAVLNLVVNSIIVLALGLSILAIN 157


>tr|A8AHH9|A8AHH9_CITK8 Putative uncharacterized protein
           OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
           / SGSC4696) GN=CKO_01813 PE=4 SV=1
          Length = 395

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = -3

Query: 329 ANGIRTSTIAWQVLSSIESHLLCYTYIVTHLQSQLQVNIIDALPSLHSYASSPADSIRVL 150
           + GI  S++AWQV   +  + L Y  I+  L          A+   H Y+ + A S+  L
Sbjct: 204 SRGIWRSSLAWQVTLFLGINSLIYYVIIGWLP---------AILISHGYSEAQAGSLHGL 254

Query: 149 YIDTTRVPSLSFSLLRHNTTN*RSIPRNITLL 54
               T  P L   L+ H   + RSI   ++L+
Sbjct: 255 LQLATAAPGLLIPLILHRFKDQRSIAALVSLM 286