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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943700
Clone id YMU02A01NGRL0003_K15
Library
Length 387
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_K15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAGGTTCGGATCCTCTTTTTTCAATGGCT
CCAGCCTGCTGAAGGTGAAGAGAGAGATACAAGAGCTGAAGAGCGGCAGTAATTCGAGTA
AGGGGGGAGCTTGCACAGCAACCAGTTCTATCACTCTCTCGGGCGAGTTGCTGCGATGGA
TCTTTGCCGGCGCAGCGGCGGTGCTTATGTACCTCAGGAACACATCTATTAACAAGAATA
TTCTGGTTCCATTGTTGGCATTGCAAGCTCCACGCGATGTTGTCACAGCGGTCCGGGGTG
AATATGGACTTTGGGGCGGCGTTTCTAGCTCTATTGGTTAGGTTGTTTACCAACTTCCAG
GGAAGCTCGAGCTACCGCTTGTGCTTG
■■Homology search results ■■ -
sp_hit_id Q9QYX3
Definition sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
Align length 42
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943700|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K15, 5'
         (387 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari GN=R...    30   3.8  
sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix lagot...    29   6.5  
sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3 OS=...    29   6.5  
sp|A6URW3|TYPH_METVS Putative thymidine phosphorylase OS=Methano...    29   8.4  
sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys edw...    29   8.4  

>sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
           GN=Rnase1 PE=2 SV=1
          Length = 149

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 26  LFKVRILFFQWLQPAEGEERDTRAEERQ*FE*GGSLHSNQFY 151
           LF + +L   W+QP+ G+E   +  ERQ  +  GS +++  Y
Sbjct: 9   LFPLFVLLLGWVQPSLGKESSAQKFERQHMDSSGSSNNSPTY 50


>sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix
           lagotricha GN=RNASE1 PE=3 SV=1
          Length = 156

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 41  ILFFQWLQPAEGEERDTRAEERQ*FE*GGSLHSNQFY 151
           +L   W+QP+ G+E   +  +RQ  +  GSL SN  Y
Sbjct: 17  LLVLGWVQPSLGKESRAKKFQRQHMDSDGSLSSNPTY 53


>sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3
           OS=Arabidopsis thaliana GN=ATX3 PE=2 SV=1
          Length = 902

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 302 FTPDRCDNIAWSLQCQQWNQN--ILVNRCVPEVHKHRRCAGKDPSQQL 165
           +T +RC    W    + W +N  I+ NRC  +V  H+ C G   SQ L
Sbjct: 488 WTTERCAVCRW---VEDWEENKMIICNRC--QVAVHQECYGVSKSQDL 530


>sp|A6URW3|TYPH_METVS Putative thymidine phosphorylase
           OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
           1224) GN=Mevan_1338 PE=3 SV=1
          Length = 505

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 197 GGAYVPQEHIY*QEYSGSIVGIASSTR 277
           G +Y PQ+ +  + +SGS++GI  ST+
Sbjct: 27  GTSYYPQDRVLIESHSGSVLGILYSTK 53


>sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys
           edwardsi GN=RNASE1 PE=2 SV=1
          Length = 149

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 26  LFKVRILFFQWLQPAEGEERDTRAEERQ*FE*GGSLHSNQFY 151
           LF + +L   W+QP+ G+E   +   RQ  +  GS +S+  Y
Sbjct: 9   LFSLLVLVLGWVQPSLGKESSAQKFNRQHMDTEGSSNSSPTY 50
tr_hit_id B8LQ60
Definition tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 96
Score (bit) 94.0
E-value 3.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943700|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K15, 5'
         (387 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea...    94   3e-18
tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr...    86   7e-16
tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam...    79   1e-13
tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs...    77   4e-13
tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or...    77   6e-13
tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza...    77   6e-13
tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam...    71   3e-11
tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr...    70   4e-11
tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413...    70   5e-11
tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m...    70   5e-11
tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29...    67   6e-10
tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939...    67   6e-10
tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who...    67   6e-10
tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939...    65   2e-09
tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939...    63   6e-09
tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   9e-08
tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro...    42   0.012
tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro...    37   0.38 
tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti...    36   0.85 
tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch...    36   1.1  
tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs...    35   2.5  
tr|Q4KUQ3|Q4KUQ3_GOSBA Cold-related protein Cor413 (COR413-like ...    35   2.5  
tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|A9UTA2|A9UTA2_MONBE Predicted protein OS=Monosiga brevicollis...    34   3.2  
tr|A0DBH7|A0DBH7_PARTE Chromosome undetermined scaffold_44, whol...    34   4.2  
tr|A0CGP9|A0CGP9_PARTE Chromosome undetermined scaffold_18, whol...    34   4.2  

>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 245

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 47/96 (48%), Positives = 63/96 (65%)
 Frame = +3

Query: 96  LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPR 275
           + S + SS GGA +   S+ LS E LRW+F  AA VLM  ++T+INK+ LVPLLAL+AP 
Sbjct: 75  IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134

Query: 276 DVVTAVRGEYGLWXXXXXXXXXXXYQLPGKLELPLV 383
           DV + +RG+YGLW           Y +PG+LELP +
Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFYYIPGELELPFL 170


>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1
           OS=Cryptomeria japonica PE=2 SV=1
          Length = 241

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
 Frame = +3

Query: 99  KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQA 269
           K G    +GG  +   A   +  S E LRW+FA ++ VLM+ ++T I K+ LVPLLALQA
Sbjct: 69  KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128

Query: 270 PRDVVTAVRGEYGLWXXXXXXXXXXXYQLPGKLELPLV 383
           P DVV+ +RG+YGLW           Y +PG++ELPL+
Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFYPIPGEMELPLL 166


>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma
           form OS=Zea mays PE=2 SV=1
          Length = 226

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 37/88 (42%), Positives = 55/88 (62%)
 Frame = +3

Query: 117 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVTAVR 296
           S+G A    SS  LS   ++WI AGA+AVL+  + T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 297 GEYGLWXXXXXXXXXXXYQLPGKLELPL 380
           G+YG W           + +PG+LELPL
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGELELPL 155


>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1781_H11.9 PE=2 SV=1
          Length = 222

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 36/91 (39%), Positives = 55/91 (60%)
 Frame = +3

Query: 108 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVT 287
           ++  +GGA    SS  LS   ++W+ AGA AVL+  + T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 288 AVRGEYGLWXXXXXXXXXXXYQLPGKLELPL 380
            ++ +YG W           + +PG+LELPL
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFSIPGELELPL 151


>tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018786 PE=4 SV=1
          Length = 247

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 36/91 (39%), Positives = 55/91 (60%)
 Frame = +3

Query: 108 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVT 287
           ++  +GGA    SS  LS   ++W+ AGA AVL+  + T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 288 AVRGEYGLWXXXXXXXXXXXYQLPGKLELPL 380
            ++ +YG W           + +PG+LELPL
Sbjct: 121 WIKSDYGQWTALLALLVRLFFSIPGELELPL 151


>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza
           sativa subsp. japonica PE=2 SV=1
          Length = 222

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 36/91 (39%), Positives = 55/91 (60%)
 Frame = +3

Query: 108 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVT 287
           ++  +GGA    SS  LS   ++W+ AGA AVL+  + T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120

Query: 288 AVRGEYGLWXXXXXXXXXXXYQLPGKLELPL 380
            ++ +YG W           + +PG+LELPL
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFCIPGELELPL 151


>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21013 PE=4 SV=1
          Length = 222

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 36/91 (39%), Positives = 55/91 (60%)
 Frame = +3

Query: 108 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVT 287
           ++  +GGA    SS  LS   ++W+ AGA AVL+  + T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 288 AVRGEYGLWXXXXXXXXXXXYQLPGKLELPL 380
            ++ +YG W           + +PG+LELPL
Sbjct: 121 WIKSDYGHWTAFLALLVRLFFSIPGELELPL 151


>tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gamma
           form OS=Hordeum vulgare var. distichum PE=2 SV=1
          Length = 215

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 35/88 (39%), Positives = 49/88 (55%)
 Frame = +3

Query: 117 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVTAVR 296
           S+G     ++S  LS    +W+   AAAVL+  + T I+K+ LVPL  LQAP  V++ ++
Sbjct: 57  SRGSGIVCSASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 116

Query: 297 GEYGLWXXXXXXXXXXXYQLPGKLELPL 380
            EYGLW              PG+LELPL
Sbjct: 117 SEYGLWTAFLALAVRLFLPFPGELELPL 144


>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1
           OS=Triticum aestivum PE=2 SV=1
          Length = 221

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 35/88 (39%), Positives = 48/88 (54%)
 Frame = +3

Query: 117 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVTAVR 296
           S+G      +S  LS    +W+   AAAVL+  + T I+K+ LVPL  LQAP  V++ ++
Sbjct: 63  SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122

Query: 297 GEYGLWXXXXXXXXXXXYQLPGKLELPL 380
            EYGLW              PG+LELPL
Sbjct: 123 SEYGLWTAFLALVVRLFLPFPGELELPL 150


>tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein
           COR413-TM1 OS=Zea mays PE=2 SV=1
          Length = 177

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 32/84 (38%), Positives = 51/84 (60%)
 Frame = +3

Query: 117 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLRNTSINKNILVPLLALQAPRDVVTAVR 296
           S+G A    SS  LS   ++WI AGA+AVL+  + T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 297 GEYGLWXXXXXXXXXXXYQLPGKL 368
           G+YG W           + +PG++
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGRV 151