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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943702
Clone id YMU02A01NGRL0003_K17
Library
Length 189
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_K17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATTTTTTGTTATTTTGGTATATTCACACGGGAATGGAAGAGACCTTGGCAGATTATGTT
CACCACGAAGTCATACGAAATTGGATTTTAATTCTCCTTAGAATCTTCCTATTAGTTGCC
ATCAAAGACTTTTGCTTGTTTTTTGTTCTTTATAATTGAGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P38460
Definition sp|P38460|YMF17_MARPO Uncharacterized mitochondrial protein ymf17 OS=Marchantia polymorpha
Align length 49
Score (bit) 76.3
E-value 5.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943702|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K17, 5'
         (161 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38460|YMF17_MARPO Uncharacterized mitochondrial protein ymf1...    76   5e-14
sp|P54323|DHSD_CHOCR Succinate dehydrogenase membrane anchor sub...    33   0.34 
sp|P80482|DHSD_RECAM Succinate dehydrogenase membrane anchor sub...    33   0.58 
sp|Q21J49|NHAB_SACD2 Na(+)/H(+) antiporter nhaB OS=Saccharophagu...    32   1.3  
sp|Q02KC3|GLSA_PSEAB Glutaminase OS=Pseudomonas aeruginosa (stra...    30   2.9  
sp|A6V7F4|GLSA_PSEA7 Glutaminase OS=Pseudomonas aeruginosa (stra...    30   2.9  
sp|Q92J98|DHSD_RICCN Succinate dehydrogenase hydrophobic membran...    30   2.9  
sp|Q9I387|GLSA_PSEAE Glutaminase OS=Pseudomonas aeruginosa GN=gl...    30   3.8  
sp|A6VW03|NHAB_MARMS Na(+)/H(+) antiporter nhaB OS=Marinomonas s...    29   6.4  
sp|A1U7H0|NHAB_MARAV Na(+)/H(+) antiporter nhaB OS=Marinobacter ...    29   6.4  
sp|P41086|DHSD_RICPR Succinate dehydrogenase hydrophobic membran...    29   6.4  
sp|Q4UKC3|DHSD_RICFE Succinate dehydrogenase hydrophobic membran...    29   8.4  

>sp|P38460|YMF17_MARPO Uncharacterized mitochondrial protein ymf17
           OS=Marchantia polymorpha GN=YMF17 PE=4 SV=1
          Length = 86

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +1

Query: 1   DFLLFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFV 147
           + LLFW+IH G+EE LADYVHHEV RNWILILLR+F L+ IK   +FFV
Sbjct: 37  NILLFWHIHVGIEEILADYVHHEVTRNWILILLRVFCLIIIKYVFVFFV 85


>sp|P54323|DHSD_CHOCR Succinate dehydrogenase membrane anchor
           subunit OS=Chondrus crispus GN=SDH4 PE=3 SV=1
          Length = 84

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVL 150
           L  +I  G++  + DY+H + I+  +LILLR+  +   + F  F+++
Sbjct: 34  LIIHISIGLKAIIHDYIHFQKIKLMLLILLRVSAIEISRSFRTFYII 80


>sp|P80482|DHSD_RECAM Succinate dehydrogenase membrane anchor
           subunit OS=Reclinomonas americana GN=SDH4 PE=4 SV=1
          Length = 120

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 7   LLFWYIHTGMEETLADYVHHEVIRNWILILLRIFLL 114
           +L W++  GME  + DYVH E  R   + L+R+  +
Sbjct: 72  ILIWHVRGGMEVIIEDYVHGEKTRIVSIFLIRVIAI 107


>sp|Q21J49|NHAB_SACD2 Na(+)/H(+) antiporter nhaB OS=Saccharophagus
           degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=nhaB
           PE=3 SV=1
          Length = 499

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 43  TLADYVHHEVIRNWILILLRIFLLVAI---KDFCLF 141
           T AD V+HEV+ N+ +ILL +F++  I   KD  LF
Sbjct: 80  TSADSVYHEVLANFKVILLLMFMVAGIYFMKDMLLF 115


>sp|Q02KC3|GLSA_PSEAB Glutaminase OS=Pseudomonas aeruginosa (strain
           UCBPP-PA14) GN=glsA PE=3 SV=1
          Length = 302

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  FWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFC 135
           F   H  +E  L  Y HH  +R   + L R F  +A K FC
Sbjct: 172 FGNFHNDVEAVLLSYFHHCALRMSCVDLARAFCFLADKGFC 212


>sp|A6V7F4|GLSA_PSEA7 Glutaminase OS=Pseudomonas aeruginosa (strain
           PA7) GN=glsA PE=3 SV=2
          Length = 302

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  FWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFC 135
           F   H  +E  L  Y HH  +R   + L R F  +A K FC
Sbjct: 172 FGNFHNDVEAVLLSYFHHCALRMSCVDLARAFCFLADKGFC 212


>sp|Q92J98|DHSD_RICCN Succinate dehydrogenase hydrophobic membrane
           anchor subunit OS=Rickettsia conorii GN=sdhD PE=4 SV=1
          Length = 126

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 31  GMEETLADYVHHEVIRNWILILLRIFLLVAIKDF 132
           GM   + DY+ +  +RN ++I++++F +V I  F
Sbjct: 85  GMRVVIEDYISYHKLRNTLIIIVQLFCIVTIVAF 118


>sp|Q9I387|GLSA_PSEAE Glutaminase OS=Pseudomonas aeruginosa GN=glsA
           PE=3 SV=1
          Length = 302

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  FWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFC 135
           F   H  +E  L  Y HH  +R   + L R F  +A K FC
Sbjct: 172 FGNFHNDVEAVLFSYFHHCALRMSCVDLARAFCFLADKGFC 212


>sp|A6VW03|NHAB_MARMS Na(+)/H(+) antiporter nhaB OS=Marinomonas sp.
           (strain MWYL1) GN=nhaB PE=3 SV=1
          Length = 500

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 43  TLADYVHHEVIRNWILILLRIFLLVAI---KDFCLF 141
           T +D V+HEV +N+ +ILL +F++  I   KD  LF
Sbjct: 81  TSSDGVYHEVNKNFDVILLLMFMVAGIYFMKDMLLF 116


>sp|A1U7H0|NHAB_MARAV Na(+)/H(+) antiporter nhaB OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=nhaB
           PE=3 SV=2
          Length = 501

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 43  TLADYVHHEVIRNWILILLRIFLLVAI 123
           T AD V+HEV+ N+ +ILL +F++  I
Sbjct: 81  TSADAVYHEVLTNFPVILLLMFMVAGI 107
tr_hit_id Q1XGC0
Definition tr|Q1XGC0|Q1XGC0_PHYPA Succinate dehydrogenase subunit 4 OS=Physcomitrella patens
Align length 49
Score (bit) 73.9
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943702|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K17, 5'
         (161 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XGC0|Q1XGC0_PHYPA Succinate dehydrogenase subunit 4 OS=Phys...    74   4e-12
tr|A0ER92|A0ER92_POPTR Succinate dehydrogenase subunit 4 OS=Popu...    68   3e-10
tr|A0ER91|A0ER91_SALGI Succinate dehydrogenase subunit 4 (Fragme...    68   3e-10
tr|A0ER90|A0ER90_POPTM Succinate dehydrogenase subunit 4 (Fragme...    68   3e-10
tr|A0ER89|A0ER89_POPNI Succinate dehydrogenase subunit 4 (Fragme...    68   3e-10
tr|A0ER88|A0ER88_POPDE Succinate dehydrogenase subunit 4 (Fragme...    68   3e-10
tr|Q5I9Z7|Q5I9Z7_LIRTU Succinate oxido-reductase subunit 4 (Frag...    67   4e-10
tr|Q952Q7|Q952Q7_SOLLC Succinate dehydrogenase subunit 4 (Fragme...    66   8e-10
tr|Q8RVA9|Q8RVA9_PEA Succinate dehydrogenase subunit 4 OS=Pisum ...    66   1e-09
tr|Q7YAK6|Q7YAK6_CHAVU Succinate:cytochrome c oxidoreductase sub...    66   1e-09
tr|Q5I9Z9|Q5I9Z9_CALFL Succinate oxido-reductase subunit 4 OS=Ca...    65   1e-09
tr|Q5I9Z8|Q5I9Z8_9MAGN Succinate oxido-reductase subunit 4 OS=La...    65   2e-09
tr|Q5M9V6|Q5M9V6_TOBAC Putative uncharacterized protein orf125e ...    64   5e-09
tr|Q5IA02|Q5IA02_9ARAE Succinate oxido-reductase subunit 4 (Frag...    62   1e-08
tr|Q5IA01|Q5IA01_PLAOC Succinate oxido-reductase subunit 4 (Frag...    62   1e-08
tr|Q5I9Z5|Q5I9Z5_ESCCA Succinate oxido-reductase subunit 4 (Frag...    62   1e-08
tr|B6VJW9|B6VJW9_VITVI Succinate dehydrogenase subunit 4 OS=Viti...    62   1e-08
tr|Q5I9Z3|Q5I9Z3_9DIPS Succinate oxido-reductase subunit 4 (Frag...    62   1e-08
tr|Q952Q4|Q952Q4_9ROSI Succinate dehydrogenase subunit 4 (Fragme...    61   3e-08
tr|A9P8Q9|A9P8Q9_POPTR Putative uncharacterized protein OS=Popul...    61   3e-08
tr|Q5I9Z2|Q5I9Z2_AMBTC Succinate oxido-reductase subunit 4 OS=Am...    59   9e-08
tr|Q952Q5|Q952Q5_GYMDI Succinate dehydrogenase subunit 4 (Fragme...    59   1e-07
tr|Q5IA00|Q5IA00_9MAGN Succinate oxido-reductase subunit 4 (Frag...    58   3e-07
tr|Q952Q6|Q952Q6_PODPE Succinate dehydrogenase subunit 4 (Fragme...    57   4e-07
tr|Q952Q3|Q952Q3_GOSHI Succinate dehydrogenase subunit 4 (Fragme...    57   4e-07
tr|Q8M1H0|Q8M1H0_CHAGL Succinate:cytochrome c oxidoreductase sub...    54   4e-06
tr|Q941A0|Q941A0_ARATH At2g46510/F11C10.20 (Succinate dehydrogen...    51   3e-05
tr|Q5I9Z4|Q5I9Z4_9MAGN Succinate oxido-reductase subunit 4 (Frag...    49   1e-04
tr|Q5I9Z6|Q5I9Z6_MAHBE Succinate oxido-reductase subunit 4 (Frag...    48   2e-04
tr|B6TMU7|B6TMU7_MAIZE Putative uncharacterized protein OS=Zea m...    47   6e-04

>tr|Q1XGC0|Q1XGC0_PHYPA Succinate dehydrogenase subunit 4
           OS=Physcomitrella patens GN=sdh4 PE=4 SV=1
          Length = 86

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = +1

Query: 1   DFLLFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFV 147
           + LLFW+IH G+EE L DYVHHE+ RNWILIL R+F L+ IK   LFFV
Sbjct: 37  NILLFWHIHVGIEEILTDYVHHEITRNWILILFRVFCLIIIKYVFLFFV 85


>tr|A0ER92|A0ER92_POPTR Succinate dehydrogenase subunit 4 OS=Populus
           trichocarpa GN=sdh4 PE=4 SV=1
          Length = 108

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +ADYVH E+ RNWIL+ LR+FLL+ IKD  L FV +
Sbjct: 49  LFWHINEGIEEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSFVSF 96


>tr|A0ER91|A0ER91_SALGI Succinate dehydrogenase subunit 4 (Fragment)
           OS=Salix gilgiana GN=sdh4 PE=4 SV=1
          Length = 100

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +ADYVH E+ RNWIL+ LR+FLL+ IKD  L FV +
Sbjct: 49  LFWHINEGIEEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSFVSF 96


>tr|A0ER90|A0ER90_POPTM Succinate dehydrogenase subunit 4 (Fragment)
           OS=Populus tremuloides GN=sdh4 PE=4 SV=1
          Length = 106

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +ADYVH E+ RNWIL+ LR+FLL+ IKD  L FV +
Sbjct: 49  LFWHINEGIEEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSFVSF 96


>tr|A0ER89|A0ER89_POPNI Succinate dehydrogenase subunit 4 (Fragment)
           OS=Populus nigra GN=sdh4 PE=4 SV=1
          Length = 106

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +ADYVH E+ RNWIL+ LR+FLL+ IKD  L FV +
Sbjct: 49  LFWHINEGIEEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSFVSF 96


>tr|A0ER88|A0ER88_POPDE Succinate dehydrogenase subunit 4 (Fragment)
           OS=Populus deltoides GN=sdh4 PE=4 SV=1
          Length = 106

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +ADYVH E+ RNWIL+ LR+FLL+ IKD  L FV +
Sbjct: 49  LFWHINEGIEEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSFVSF 96


>tr|Q5I9Z7|Q5I9Z7_LIRTU Succinate oxido-reductase subunit 4
           (Fragment) OS=Liriodendron tulipifera GN=sdh4 PE=4 SV=1
          Length = 106

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 28/48 (58%), Positives = 38/48 (79%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +AD+VH E+IRNWIL+ LR+FLL+ IKD  L  V +
Sbjct: 48  LFWHINVGIEEIMADHVHQEMIRNWILVYLRLFLLIVIKDLFLLIVSF 95


>tr|Q952Q7|Q952Q7_SOLLC Succinate dehydrogenase subunit 4 (Fragment)
           OS=Solanum lycopersicum GN=sdh4 PE=2 SV=1
          Length = 100

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 28/48 (58%), Positives = 37/48 (77%)
 Frame = +1

Query: 10  LFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVLY 153
           LFW+I+ G+EE +ADYVH E+ RNWIL+ LR+FLL+ IKD  L  V +
Sbjct: 49  LFWHINEGIEEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSLVFF 96


>tr|Q8RVA9|Q8RVA9_PEA Succinate dehydrogenase subunit 4 OS=Pisum
           sativum GN=sdh4 PE=2 SV=1
          Length = 223

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +1

Query: 1   DFLLFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFV 147
           +F +FW+I+ G+EE LADYVHHE+ R +I I LR+FL++AIKD  L FV
Sbjct: 173 NFFVFWHINAGIEEILADYVHHEMTREFIFISLRLFLIIAIKDVFLNFV 221


>tr|Q7YAK6|Q7YAK6_CHAVU Succinate:cytochrome c oxidoreductase
           subunit 4 OS=Chara vulgaris GN=sdh4 PE=4 SV=1
          Length = 92

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 28/50 (56%), Positives = 39/50 (78%)
 Frame = +1

Query: 1   DFLLFWYIHTGMEETLADYVHHEVIRNWILILLRIFLLVAIKDFCLFFVL 150
           + LLFW++H G+EE LADY+HHEV RN+I + LR+F+L+ IK   +F VL
Sbjct: 37  NILLFWHMHVGIEEILADYIHHEVTRNFICLFLRVFVLIIIKYVFVFCVL 86