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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943706
Clone id YMU02A01NGRL0003_K24
Library
Length 216
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_K24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATCTTAGTTGAGGGCACAAAGAAATCAATCAATGTGAAAGCTGTGCCTGAGATTTTGTA
TCTTTGTGGACATTGATGCTGGTCATGAGCCAGCATTTATGAGCATAAAATTTTCTGGAA
ATGGGGGAAGTGATATTATTTACCTGATGGTTGGTCAAATCCATGGTTCTTTTTCGTTTT
TATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P12847
Definition sp|P12847|MYH3_RAT Myosin-3 OS=Rattus norvegicus
Align length 43
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943706|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K24, 5'
         (186 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12847|MYH3_RAT Myosin-3 OS=Rattus norvegicus GN=Myh3 PE=2 SV=1     29   6.3  
sp|P13541|MYH3_MOUSE Myosin-3 OS=Mus musculus GN=Myh3 PE=2 SV=2        29   6.3  
sp|P11055|MYH3_HUMAN Myosin-3 OS=Homo sapiens GN=MYH3 PE=1 SV=2        29   6.3  

>sp|P12847|MYH3_RAT Myosin-3 OS=Rattus norvegicus GN=Myh3 PE=2 SV=1
          Length = 1940

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 170 RTMDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +T+D  +H VN ++  +  K +    W++T IN   DTK   Q
Sbjct: 416 QTVDQVHHAVNALSKSVYEKLFL---WMVTRINQQLDTKLPRQ 455


>sp|P13541|MYH3_MOUSE Myosin-3 OS=Mus musculus GN=Myh3 PE=2 SV=2
          Length = 1940

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 170 RTMDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +T+D  +H VN ++  +  K +    W++T IN   DTK   Q
Sbjct: 416 QTVDQVHHAVNALSKSVYEKLFL---WMVTRINQQLDTKLPRQ 455


>sp|P11055|MYH3_HUMAN Myosin-3 OS=Homo sapiens GN=MYH3 PE=1 SV=2
          Length = 1940

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 170 RTMDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +T+D  +H VN ++  +  K +    W++T IN   DTK   Q
Sbjct: 416 QTVDQVHHAVNALSKSVYEKLFL---WMVTRINQQLDTKLPRQ 455
tr_hit_id A5IEP2
Definition tr|A5IEP2|A5IEP2_LEGPC Putative uncharacterized protein OS=Legionella pneumophila (strain Corby)
Align length 41
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943706|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_K24, 5'
         (186 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5IEP2|A5IEP2_LEGPC Putative uncharacterized protein OS=Legio...    35   1.9  
tr|B0CVG8|B0CVG8_LACBS Predicted protein (Fragment) OS=Laccaria ...    35   1.9  
tr|Q5ZSG5|Q5ZSG5_LEGPH Putative uncharacterized protein OS=Legio...    35   2.5  
tr|Q5X1X1|Q5X1X1_LEGPA Putative uncharacterized protein OS=Legio...    35   2.5  
tr|Q5WTQ0|Q5WTQ0_LEGPL Putative uncharacterized protein OS=Legio...    33   9.4  

>tr|A5IEP2|A5IEP2_LEGPC Putative uncharacterized protein
           OS=Legionella pneumophila (strain Corby) GN=LPC_1911
           PE=4 SV=1
          Length = 555

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 164 MDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +D  NH+   +   + RKF   K W++TS N ++ TK ++Q
Sbjct: 13  IDFANHKRPEVLMVLKRKFRTQKDWIITSFNQYQFTKEESQ 53


>tr|B0CVG8|B0CVG8_LACBS Predicted protein (Fragment) OS=Laccaria
           bicolor (strain S238N-H82) GN=LACBIDRAFT_230493 PE=4
           SV=1
          Length = 441

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 173 KRTMDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQLSH*LISLCPQLR 3
           +R+ +     V+NIT+ I   FY   CW+  ++   +D + +AQ+   LIS+  + R
Sbjct: 214 QRSREQKTEHVDNITTKIIHFFYQIACWVADAVLSKEDARKRAQVVKHLISVADRCR 270


>tr|Q5ZSG5|Q5ZSG5_LEGPH Putative uncharacterized protein
           OS=Legionella pneumophila subsp. pneumophila (strain
           Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg2552 PE=4
           SV=1
          Length = 555

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 164 MDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +D  NH+   +   + RKF   K W++TS N ++ TK ++Q
Sbjct: 13  IDFANHKRPEVIMVLRRKFRTQKDWIITSFNQYQFTKEESQ 53


>tr|Q5X1X1|Q5X1X1_LEGPA Putative uncharacterized protein
           OS=Legionella pneumophila (strain Paris) GN=lpp2622 PE=4
           SV=1
          Length = 555

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 164 MDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +D  NH+   +   + RKF   K W++TS N ++ TK ++Q
Sbjct: 13  IDFANHKRPEVLMVLRRKFRTQKDWIITSFNQYQFTKEESQ 53


>tr|Q5WTQ0|Q5WTQ0_LEGPL Putative uncharacterized protein
           OS=Legionella pneumophila (strain Lens) GN=lpl2473 PE=4
           SV=1
          Length = 555

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 164 MDLTNHQVNNITSPISRKFYAHKCWLMTSINVHKDTKSQAQ 42
           +D  NH+   +   + RKF   K W++TS N ++ T  ++Q
Sbjct: 13  IDFANHKRPEVLMVLRRKFRTQKDWIITSFNQYQFTNEESQ 53