NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943722
Clone id YMU02A01NGRL0003_L21
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTGAAGAGGAAACGCAGAAAGATGAGGCAGAGATCCAAGTAGGACTTTTGAAGTTTCTAT
CGGCGCTGAGGGAGCATGTGTGGTCTTCTATCTCAATGGAGAGTTTGAGCTGGATCTCTC
TCTTGTGAATAGCGTAGCAGTGACAAGGGATTGATTGCTTCTCTTATACCCTCCCAAGGA
CGAAGGCCTGCTCTCCTTCTGGAATATGATTTTGAGTTGTCTTTCTTTTTGCCCTTTTGA
TGAACGCTCTAAGGCTAACATGAAAACTGGATTATTGAGACTATTGTTTTGTGCATCTTT
TGGCTCTTGTTACTAGATTTTTAAATAGAGGAAGGAAGGCTGAAGTGTGTTTCCNAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3UQN2
Definition sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
Align length 75
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943722|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L21, 5'
         (342 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus ...    33   0.58 
sp|O88974|SETB1_MOUSE Histone-lysine N-methyltransferase SETDB1 ...    30   3.7  
sp|O50918|DBPB_BORBU Decorin-binding protein B OS=Borrelia burgd...    30   3.7  
sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain-containing prot...    30   4.9  
sp|A4G8T8|MURG_HERAR UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    29   8.3  

>sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
           GN=Fcho2 PE=1 SV=1
          Length = 809

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 23/75 (30%), Positives = 34/75 (45%)
 Frame = -2

Query: 269 SLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSN 90
           S+ N     A+ R S  Q  R        +S+PSSL   K +N  L    LF     SS+
Sbjct: 380 SIGNITLSPAVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSS 439

Query: 89  SPLR*KTTHAPSAPI 45
           +PL   ++  P+ P+
Sbjct: 440 APLTSSSSARPTTPL 454


>sp|O88974|SETB1_MOUSE Histone-lysine N-methyltransferase SETDB1
            OS=Mus musculus GN=Setdb1 PE=1 SV=1
          Length = 1307

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 242  ALERSSKGQKERQLKIIFQKESRPSSLG 159
            A  R ++GQKE +L  +  K+SRP  LG
Sbjct: 943  ATRRQTRGQKENELSEMTSKDSRPPDLG 970


>sp|O50918|DBPB_BORBU Decorin-binding protein B OS=Borrelia
           burgdorferi GN=dbpB PE=3 SV=1
          Length = 187

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = -2

Query: 287 KDAQNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQS 135
           ++++NN +N    +LA    +K Q E QLK++  KE +    GG K++N+S
Sbjct: 139 EESKNNPINTAERLLA----AKAQIENQLKVV--KEKQNIENGGEKKNNKS 183


>sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain-containing protein
           11 OS=Homo sapiens GN=ZBTB11 PE=1 SV=2
          Length = 1053

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = -1

Query: 258 SSFHVSLRAFIKRAKRKTTQNHIPEGEQAFVLGRV*EKQSIPCHCYAIHKREIQLKLSIE 79
           S+F  S     K AK+K    H    E  FV  +   K+S P HC A+ K+  + +LS +
Sbjct: 157 SNFTSSPTTASKPAKKKPVSKH----ELVFVDTKGVVKRSSPKHCQAVLKQLNEQRLSNQ 212

Query: 78  IEDHTCSLSADRNFKSPTWISASS 7
             D T  +  +      + +SA+S
Sbjct: 213 FCDVTLLIEGEEYKAHKSVLSANS 236


>sp|A4G8T8|MURG_HERAR
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Herminiimonas arsenicoxydans GN=murG PE=3
           SV=1
          Length = 358

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 199 LSCLSFCPFDERSKANMKTGLLRLLFCASFGSCY*IFK*RKEG 327
           +  +SF     +   +  TG+LRLL  ASFG+C+ I   RK G
Sbjct: 53  MDTISFAGLRGKGLRHTVTGVLRLL--ASFGTCFSILARRKPG 93
tr_hit_id Q28BL8
Definition tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1 (Fragment) OS=Xenopus tropicalis
Align length 86
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943722|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L21, 5'
         (342 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1 (Fragm...    36   0.84 
tr|A4IHL6|A4IHL6_XENTR Rab11fip1 protein OS=Xenopus tropicalis G...    36   0.84 
tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis...    34   3.2  
tr|A4S1I5|A4S1I5_OSTLU Predicted protein (Fragment) OS=Ostreococ...    33   5.5  
tr|Q8IAQ1|Q8IAQ1_PLAF7 Putative uncharacterized protein PF08_011...    33   5.5  
tr|B4P842|B4P842_DROYA GE12834 OS=Drosophila yakuba GN=GE12834 P...    33   5.5  
tr|Q6BLU2|Q6BLU2_DEBHA DEHA2F10714p OS=Debaryomyces hansenii GN=...    33   5.5  
tr|Q3TPU3|Q3TPU3_MOUSE Putative uncharacterized protein OS=Mus m...    33   9.3  
tr|A9UYH3|A9UYH3_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.3  

>tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1
           (Fragment) OS=Xenopus tropicalis GN=TEgg047a21.1-001
           PE=2 SV=1
          Length = 996

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = -2

Query: 296 QEPKDA-QNNS----LNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSL 132
           + PKD+ Q NS      NP++  A   SSK  KE +  +  +KE  P++      SN SL
Sbjct: 327 ESPKDSSQTNSPQIVRKNPLYASAENLSSKTPKEAKNSLFPEKEQTPAA------SNDSL 380

Query: 131 VTATLFTRERSSSNSPLR*KTTHAPS 54
            ++T+   + S S  P R KT   PS
Sbjct: 381 KSSTVSASQNSKSEEP-RSKTPPLPS 405


>tr|A4IHL6|A4IHL6_XENTR Rab11fip1 protein OS=Xenopus tropicalis
           GN=rab11fip1 PE=2 SV=1
          Length = 601

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = -2

Query: 296 QEPKDA-QNNS----LNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSL 132
           + PKD+ Q NS      NP++  A   SSK  KE +  +  +KE  P++      SN SL
Sbjct: 327 ESPKDSSQTNSPQIVRKNPLYASAENLSSKTPKEAKNSLFPEKEQTPAA------SNDSL 380

Query: 131 VTATLFTRERSSSNSPLR*KTTHAPS 54
            ++T+   + S S  P R KT   PS
Sbjct: 381 KSSTVSASQNSKSEEP-RSKTPPLPS 405


>tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=27937 PE=4 SV=1
          Length = 323

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -2

Query: 200 KIIFQKESRP-----SSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETS 36
           +++F + SRP     SS    KR+  +   +   T++   S +P + + T APS P ETS
Sbjct: 254 RLVFNRTSRPTAAAASSTAASKRTKPTSAPSATVTKKAKPSPAPKKHEPTQAPSPPPETS 313

Query: 35  K 33
           +
Sbjct: 314 R 314


>tr|A4S1I5|A4S1I5_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_88023 PE=4 SV=1
          Length = 424

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -2

Query: 263 NNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSP 84
           NNPV M  L+  S+ +KER+     +KE+R       KR  +S       +  RS S SP
Sbjct: 160 NNPVKMAQLKDESRAEKERRRA---KKEARRDKKRSSKRDKRSR-KCDSSSESRSRSRSP 215

Query: 83  LR*KTTHAPSAPIETSK 33
            R +  H   +P   S+
Sbjct: 216 KRERRRHRSRSPRHRSR 232


>tr|Q8IAQ1|Q8IAQ1_PLAF7 Putative uncharacterized protein PF08_0116
           OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0116 PE=4
           SV=1
          Length = 698

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/64 (23%), Positives = 34/64 (53%)
 Frame = -2

Query: 278 QNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERS 99
           QNN++NN +++ ++   +  +K ++  II+           YK+      T+TL+T   +
Sbjct: 221 QNNNINNNMYIESMTSENNKKKLKEKNIIYLSSLEGKKKKMYKKYRNDQDTSTLYTHNNN 280

Query: 98  SSNS 87
           ++N+
Sbjct: 281 NNNN 284


>tr|B4P842|B4P842_DROYA GE12834 OS=Drosophila yakuba GN=GE12834 PE=4
           SV=1
          Length = 530

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/101 (24%), Positives = 48/101 (47%)
 Frame = -2

Query: 329 QPSFLYLKI**QEPKDAQNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYK 150
           Q S +++++  Q+ ++         V  L LER  + Q+ER+LK+  ++ S  +++   +
Sbjct: 349 QLSRMHVELCQQQAQEEHEEDRIEQVQQLELERELERQRERELKVQQERASEAAAIAASE 408

Query: 149 RSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETSKVL 27
              Q + T    T   SSSN+ +   T     +P E  + L
Sbjct: 409 DEGQLVETIDTTTIITSSSNTSICMTTLLRKDSPRELEQPL 449


>tr|Q6BLU2|Q6BLU2_DEBHA DEHA2F10714p OS=Debaryomyces hansenii
           GN=DEHA2F10714g PE=4 SV=2
          Length = 490

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 278 QNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSL--GGYKRSNQSLVTAT 120
           +NNSLNN +   A    S+G  ER+  +   K SRP S   G +K  NQS+ +++
Sbjct: 339 RNNSLNNDMIQYA----SRGSYERRYSLADHKFSRPGSFSNGNHKFRNQSISSSS 389


>tr|Q3TPU3|Q3TPU3_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Fcho2 PE=1 SV=1
          Length = 538

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/75 (30%), Positives = 34/75 (45%)
 Frame = -2

Query: 269 SLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSN 90
           S+ N     A+ R S  Q  R        +S+PSSL   K +N  L    LF     SS+
Sbjct: 109 SIGNITLSPAVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSS 168

Query: 89  SPLR*KTTHAPSAPI 45
           +PL   ++  P+ P+
Sbjct: 169 APLTSSSSARPTTPL 183


>tr|A9UYH3|A9UYH3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=32275 PE=4 SV=1
          Length = 476

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -2

Query: 293 EPKDAQNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLF 114
           +P  A +N+LNNP   LAL      +              P+     KR   S+  +T  
Sbjct: 121 DPSQAMHNNLNNPFGDLALFVGMDNEDSFMPNSAEADSQDPTGEPAPKRRPSSVAKSTAS 180

Query: 113 TRERSSSNSPLR*KTTHAP 57
           + + SSSN+P R +  + P
Sbjct: 181 SDDNSSSNNPARSRRYNLP 199