DK943724 |
Clone id |
YMU02A01NGRL0003_L23 |
Library |
YMU02 |
Length |
547 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_L23. 5' end sequence. |
Accession |
DK943724 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL362Contig1 |
Sequence |
CTATCTCATCGGCTGAAGTTCTTGTTCTCAGCCGGGCTTGCTACTTCTTACTGCGAGCCA TGGCAGCTGCGATGTCCACATCCCTATCTACGATTTCTTCGTCTTTAATCGGGCAGTCAC CGGATGCTACAAAGTTGAGAGCTCCAGCGCGAGCCATTGCAGGCCTTCCAGCTTTCCCAA CTTTTCACATCTCGAACTCCTCACAAAGGCAAGAAAAGAAGGGGAGTTCTGCAGGTGAAC AGGTGGCATTGCCTGCTGCAGTGCTTGTGGCTGCGGTTGCGCAAGGGGGGTCTGCGATTG CCTTGGTGGATGATCGGCTGTCAACGGAGGGTACTGGCCTTGGTCTTGGAGTTAGCAATC CTTTGCTCATCTGGATCCTCCTTGGTGTTGCAACCCTAATCTGGGCCCTTTTCTTTGTAT ATTCGTCCCGCCTCCCCCCTGGCGATGATGACTCGGGTCTCTCATTGTAGGGCTGCCTCC ATGCATGTGCCCTTCAATTGCTTTGTATGAAATGCATAGACTGTGAAAACTTCAAGAAAA GGGACTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q41387 |
Definition |
sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea |
Align length |
58 |
Score (bit) |
74.3 |
E-value |
4.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943724|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_L23, 5' (547 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c... 74 4e-13 sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, c... 74 5e-13 sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, c... 73 1e-12 sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c... 54 4e-07 sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (F... 35 0.24 sp|Q8ZPK5|CLCB_SALTY Voltage-gated ClC-type chloride channel clc... 27 2.8 sp|O70554|SPR2B_MOUSE Small proline-rich protein 2B OS=Mus muscu... 31 3.4 sp|Q8Z6Y0|CLCB_SALTI Voltage-gated ClC-type chloride channel clc... 27 4.7 sp|Q5UNV3|YL690_MIMIV Uncharacterized protein L690 OS=Acanthamoe... 30 7.7 sp|A8AGW0|CLCB_CITK8 Voltage-gated ClC-type chloride channel clc... 25 10.0
>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1 Length = 137
Score = 74.3 bits (181), Expect = 4e-13 Identities = 39/58 (67%), Positives = 47/58 (81%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A+ALVD+R+STEGTGL G+SN LL WIL GV LIWAL+FVY+S L D++SGLSL Sbjct: 81 AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEE-DEESGLSL 137
>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1 Length = 124
Score = 73.9 bits (180), Expect = 5e-13 Identities = 36/58 (62%), Positives = 46/58 (79%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A+ALVD+R+STEGTGL LG+SN LL WILLGV LIW+L+ +Y+S L ++ GLSL Sbjct: 67 AMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESGGLSL 124
>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2 Length = 133
Score = 72.8 bits (177), Expect = 1e-12 Identities = 38/58 (65%), Positives = 45/58 (77%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A+ALVD+R+STEGTGL G+SN LL WIL GV LIW FFVY+S L D++SGLSL Sbjct: 77 AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEE-DEESGLSL 133
>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1 Length = 115
Score = 54.3 bits (129), Expect = 4e-07 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDD-DSGLSL 467 A ALVD+R++ +GTG GV++P+L W+LLGV +WA++F+ L +D D GL L Sbjct: 57 AFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115
>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (Fragment) OS=Triticum aestivum GN=psbW PE=1 SV=1 Length = 20
Score = 35.0 bits (79), Expect = 0.24 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = +3
Query: 303 LVDDRLSTEGTGLGLGVSN 359 LVD+R+STEGTGL LG+SN Sbjct: 1 LVDERMSTEGTGLSLGLSN 19
>sp|Q8ZPK5|CLCB_SALTY Voltage-gated ClC-type chloride channel clcB OS=Salmonella typhimurium GN=clcB PE=3 SV=2 Length = 417
Score = 26.6 bits (57), Expect(2) = 2.8 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2
Query: 434 PPWR**LGSLIVGLPPCMCPSI 499 PPW+ LG LIVGL + P++ Sbjct: 256 PPWQLALGGLIVGLLSLLTPTV 277
Score = 23.1 bits (48), Expect(2) = 2.8 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +3
Query: 333 TGLGLGVSNPLLIWIL 380 TGL G+ PLL+W++ Sbjct: 227 TGLVAGLCGPLLMWLM 242
>sp|O70554|SPR2B_MOUSE Small proline-rich protein 2B OS=Mus musculus GN=Sprr2b PE=2 SV=1 Length = 98
Score = 31.2 bits (69), Expect = 3.4 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2
Query: 377 PPWCCNPNLGPFLCIFVPPPPWR**LGSLIVGLPPCM--CP 493 PP CC P P C PP PW+ V PPC CP Sbjct: 56 PPVCCEPCPPPVCCEPCPPQPWQ--PKCPPVQFPPCQQKCP 94
>sp|Q8Z6Y0|CLCB_SALTI Voltage-gated ClC-type chloride channel clcB OS=Salmonella typhi GN=clcB PE=3 SV=2 Length = 417
Score = 26.6 bits (57), Expect(2) = 4.7 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2
Query: 434 PPWR**LGSLIVGLPPCMCPSI 499 PPW+ LG LIVGL + P++ Sbjct: 256 PPWQLALGGLIVGLLSLLTPTV 277
Score = 22.3 bits (46), Expect(2) = 4.7 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +3
Query: 333 TGLGLGVSNPLLIWIL 380 TGL G+ PLL+W++ Sbjct: 227 TGLVAGLWGPLLMWLM 242
>sp|Q5UNV3|YL690_MIMIV Uncharacterized protein L690 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L690 PE=1 SV=1 Length = 374
Score = 30.0 bits (66), Expect = 7.7 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = +2
Query: 2 YLIG*SSCSQPGLLLLTASHGSC----DVHIPIYDFFVFNRAVTG 124 + I + S+ GL+L + HG+C V P++ F V N+ +TG Sbjct: 128 FSISTGNISRGGLMLTCSEHGTCHSFNPVVDPLHSFIVLNQQITG 172
>sp|A8AGW0|CLCB_CITK8 Voltage-gated ClC-type chloride channel clcB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=clcB PE=3 SV=1 Length = 417
Score = 25.0 bits (53), Expect(2) = 10.0 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2
Query: 434 PPWR**LGSLIVGLPPCMCPSI 499 PPW+ LG IVGL + P++ Sbjct: 256 PPWQLALGGFIVGLLSLLTPAV 277
Score = 22.7 bits (47), Expect(2) = 10.0 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +3
Query: 333 TGLGLGVSNPLLIWIL 380 TGL GV PL +W++ Sbjct: 227 TGLVAGVCGPLFMWLM 242
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SEQ6 |
Definition |
tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
111 |
Score (bit) |
103.0 |
E-value |
8.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943724|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_L23, 5' (547 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 8e-21 tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella paten... 95 3e-18 tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 91 5e-17 tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomit... 91 5e-17 tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Popul... 79 2e-13 tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea... 79 2e-13 tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea... 78 3e-13 tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Popul... 77 5e-13 tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza... 77 8e-13 tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein ... 76 1e-12 tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein ... 76 1e-12 tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein ... 76 1e-12 tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein ... 76 1e-12 tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein ... 76 1e-12 tr|A7QVP6|A7QVP6_VITVI Chromosome chr14 scaffold_190, whole geno... 76 1e-12 tr|A5C3A9|A5C3A9_VITVI Putative uncharacterized protein OS=Vitis... 76 1e-12 tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medic... 75 2e-12 tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert seque... 74 5e-12 tr|A2WVK4|A2WVK4_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|A1YMY4|A1YMY4_BRACM Component of 6.1 kDa polypeptide of photo... 73 9e-12 tr|Q41908|Q41908_ARATH Photosystem II 7kD protein OS=Arabidopsis... 73 1e-11 tr|Q9AXN8|Q9AXN8_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 72 3e-11 tr|A7PUM2|A7PUM2_VITVI Chromosome chr7 scaffold_31, whole genome... 72 3e-11 tr|Q8W536|Q8W536_9FABA Photosystem II reaction center (Fragment)... 69 2e-10 tr|Q9AXP0|Q9AXP0_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 67 5e-10 tr|A8JFQ7|A8JFQ7_CHLRE Photosystem II reaction center W protein ... 54 4e-06 tr|Q944K9|Q944K9_ARATH At2g30570/T6B20.8 OS=Arabidopsis thaliana... 50 1e-04 tr|B5A4J5|B5A4J5_GYMST Photosystem II reaction center W protein ... 50 1e-04 tr|A2SY30|A2SY30_MESVI Photosystem II reaction center W protein ... 47 5e-04 tr|A4RT20|A4RT20_OSTLU Photosystem II reaction center W protein,... 47 7e-04
>tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_128580 PE=4 SV=1 Length = 142
Score = 103 bits (256), Expect = 8e-21 Identities = 57/111 (51%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Frame = +3
Query: 138 RAPARAIAGLPAFPTFHISNSSQRQEK-KGSSAGEQXXXXXXXXXXXXXQGGSAIALVDD 314 RA AR +AG+P I S +++E KG G ALVD+ Sbjct: 32 RAAARPVAGVPVLAMPRIVCSLEKKESNKGDVNGLPQLAAAVTSAATMAYAHPVFALVDE 91
Query: 315 RLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 RLSTEGTGLGLGVSNP L WIL+GV L+WA++F YSS LP GDDDSGLSL Sbjct: 92 RLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 142
>tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_232256 PE=4 SV=1 Length = 64
Score = 94.7 bits (234), Expect = 3e-18 Identities = 44/56 (78%), Positives = 49/56 (87%) Frame = +3
Query: 300 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 ALVD+RLSTEGTGLGLGVSNP L WIL+GV L+WA++F YSS LP GDDDSGLSL Sbjct: 9 ALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 64
>tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomitrella patens PE=2 SV=1 Length = 69
Score = 90.5 bits (223), Expect = 5e-17 Identities = 43/56 (76%), Positives = 47/56 (83%) Frame = +3
Query: 300 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 ALVD+RLSTEGTGLGLG+SN L WIL+GV LIWAL+F YSS LP GDDDSGL L Sbjct: 14 ALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 69
>tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_9752 PE=4 SV=1 Length = 67
Score = 90.5 bits (223), Expect = 5e-17 Identities = 43/56 (76%), Positives = 47/56 (83%) Frame = +3
Query: 300 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 ALVD+RLSTEGTGLGLG+SN L WIL+GV LIWAL+F YSS LP GDDDSGL L Sbjct: 12 ALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 67
>tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 133
Score = 79.0 bits (193), Expect = 2e-13 Identities = 39/58 (67%), Positives = 48/58 (82%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A+ALVD+RLSTEGTGL G+SN LL+WILLGV IW+L+FVY+S L D+DSG+SL Sbjct: 77 ALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFVYTSSLDE-DEDSGMSL 133
>tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 146
Score = 79.0 bits (193), Expect = 2e-13 Identities = 41/58 (70%), Positives = 47/58 (81%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A ALVD+RLSTEGTGLGLG+SNPLL WIL+GV TLIW L+F S + D+DSGLSL Sbjct: 90 AFALVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSNVKE-DEDSGLSL 146
>tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 146
Score = 78.2 bits (191), Expect = 3e-13 Identities = 41/58 (70%), Positives = 47/58 (81%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A ALVD+RLSTEGTGLGLG+SNPLL WIL+GV TLIW L+F S + D+DSGLSL Sbjct: 90 AFALVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSGVKE-DEDSGLSL 146
>tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 134
Score = 77.4 bits (189), Expect = 5e-13 Identities = 38/58 (65%), Positives = 48/58 (82%) Frame = +3
Query: 294 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 A+ALVD+R+STEGTGL G+SN LL+WILLGV LIWAL+F Y++ L D++SGLSL Sbjct: 78 ALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEE-DEESGLSL 134
>tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018369 PE=4 SV=1 Length = 128
Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/59 (64%), Positives = 47/59 (79%) Frame = +3
Query: 291 SAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 +A+ALVD+R+STEGTGL LG+SN LL WILLGV LIW+L+ VY+S L D+ GLSL Sbjct: 70 AAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDDDDESGGLSL 128
>tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein OS=Zea mays PE=2 SV=1 Length = 127
Score = 76.3 bits (186), Expect = 1e-12 Identities = 40/57 (70%), Positives = 47/57 (82%) Frame = +3
Query: 297 IALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 467 +ALVD+R+STEGTGL LG+SN LL WILLGV LIW+L+ VY+S L DDDSGLSL Sbjct: 72 LALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDE-DDDSGLSL 127
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