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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943725
Clone id YMU02A01NGRL0003_L24
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_L24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCATATCTCAATTCGGGCAAGAAGGTAGCCATAGCCAACACCAGACAGTTTCGGCATCGA
GGAAGCTCTTCTTTTAGTGGGTTTTCAGGAGTCAAGAGTGATTATCAAAGATTAGCGGGT
AATTAATCTCTGCATTCCCTGCATCATCATGCAAGGCGCAGCGCTGCTCACTAGCCCCGC
TGCCACTGCTGCTGCATTGACTCCCTGTGCCGCATTCCTGCGCTACACCTCCACAAATGT
GAGGTGTACCAGTCCCCTCCCCTTGTTTTCTTCAAGATCTCTGCAACAGAAGCGGCGCCC
ACTTCTTCGTGCACAGCAACAAGATCAGGATTATGTTACCTACGATGCGAAGAAATCGGT
TTTCCCTGCTGAGGCTTGTGAAGAGCTCGGTGGTGAAGCATGTGAAGTTGATGGTGTTGG
CCCTGAGGTGAAGGGCTCTGCCTCTGCTCCCAAGCAACAATCTTCGTCGAAGGCTGGGAG
TGGTCCGGATCGGGAGTACGTGGATTACAAGGAAAACAAGACTGTCTTTCCCGGAGAGGC
TTGCGATGACCTCGGAGGTGAGTTTTGCGAGCCAGAGTA
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 49.3
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943725|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L24, 5'
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su...    49   1e-05

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
           subsp. japonica GN=LIR1 PE=2 SV=1
          Length = 128

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
           DR+Y+ Y E  TVFP EACDDLGGEFC+
Sbjct: 99  DRDYLSYDEPTTVFPEEACDDLGGEFCK 126



 Score = 35.8 bits (81), Expect = 0.16
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFC 568
           VDY  N +VFP EACD +GGE C
Sbjct: 50  VDYSSNISVFPMEACDLIGGEAC 72
tr_hit_id A7QT69
Definition tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome shotgun sequence OS=Vitis vinifera
Align length 30
Score (bit) 61.2
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943725|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L24, 5'
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom...    61   4e-08
tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic...    61   5e-08
tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O...    60   7e-08
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea...    59   1e-07
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=...    59   2e-07
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B...    58   4e-07
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ...    56   1e-06
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe...    56   2e-06
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T...    54   6e-06
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ...    54   8e-06
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ...    54   8e-06
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet...    53   1e-05
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali...    52   2e-05
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1       52   2e-05
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul...    52   3e-05
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul...    52   3e-05
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE...    50   7e-05
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1        49   2e-04
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen...    49   2e-04
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome...    49   3e-04
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P...    47   8e-04
tr|B1Q4T3|B1Q4T3_9ROSI CCR protein OS=Bruguiera gymnorhiza PE=4 ...    35   3.9  

>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
           PE=4 SV=1
          Length = 139

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCEPE 577
           DREY++Y   KTVFPGEACDDLGGEFCEPE
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFCEPE 130



 Score = 36.2 bits (82), Expect = 1.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFCEPE 577
           VDY    +VFP EAC+ +GGE C+ E
Sbjct: 52  VDYSSTTSVFPAEACEVVGGEACDAE 77


>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 144

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
 Frame = +2

Query: 218 LRYTSTNVRCTSPLPLFSSRSLQQKRRPL-LRAQQQDQDYVTYDAKKSVFPXXXXXXXXX 394
           + + +TN+  + P  L +SRS   +   + +     D   V Y++  SVFP         
Sbjct: 21  ISHLATNL--SFPTKLIASRSSPPRYTAIKVVTDNSDPSTVDYNSAFSVFPAEACETVGG 78

Query: 395 XXXXVDGVGPEVXXXXXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEP 574
                D + PEV                   +REY+DY E KTVF  EACDDLGG FCEP
Sbjct: 79  DACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEP 137

Query: 575 E 577
           +
Sbjct: 138 D 138


>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
           OS=Picea abies GN=LIR PE=2 SV=1
          Length = 117

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 27/31 (87%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
 Frame = +2

Query: 488 DREYVDY-KENKTVFPGEACDDLGGEFCEPE 577
           DREYV+Y  E KTVFPGEACDDLGGEFCEPE
Sbjct: 74  DREYVEYASEQKTVFPGEACDDLGGEFCEPE 104



 Score = 37.0 bits (84), Expect = 0.79
 Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 500 VDYKEN-KTVFPGEACDDLGGEFCEPE 577
           VDY  + K+VFP EACD +GGE CE E
Sbjct: 26  VDYDSSAKSVFPAEACDTVGGEACEGE 52


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 27/31 (87%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
 Frame = +2

Query: 488 DREYVDY-KENKTVFPGEACDDLGGEFCEPE 577
           DREYV+Y  E KTVFPGEACDDLGGEFCEPE
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFCEPE 130



 Score = 37.0 bits (84), Expect = 0.79
 Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 500 VDYKEN-KTVFPGEACDDLGGEFCEPE 577
           VDY  + K+VFP EACD +GGE CE E
Sbjct: 52  VDYDSSAKSVFPAEACDTVGGEACEGE 78


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 27/31 (87%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
 Frame = +2

Query: 488 DREYVDY-KENKTVFPGEACDDLGGEFCEPE 577
           DREYV+Y  E KTVFPGEACDDLGGEFCEPE
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFCEPE 130



 Score = 37.0 bits (84), Expect = 0.79
 Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 500 VDYKEN-KTVFPGEACDDLGGEFCEPE 577
           VDY  + K+VFP EACD +GGE CE E
Sbjct: 52  VDYDSSAKSVFPAEACDTVGGEACEGE 78


>tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=2
           SV=1
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +2

Query: 272 SRSLQQKRRPLLRAQQ----QDQDYVTYDAKKSVFPXXXXXXXXXXXXXVDGVGPEVXXX 439
           +RS+ ++ +  L+A+     QD   V Y +  SVFP             V+ + PEV   
Sbjct: 30  TRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVE-MYPEVKLK 88

Query: 440 XXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEPE 577
                           +REY+ Y   KTVFP EACDDLGGEFC+PE
Sbjct: 89  PEAKKGNSVTEPV---EREYLQYDSPKTVFPAEACDDLGGEFCDPE 131


>tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein
           OS=Brassica campestris PE=2 SV=1
          Length = 138

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCEPE 577
           DREY++Y   KTVFP EACDDLGGEFCEP+
Sbjct: 103 DREYLEYNNPKTVFPAEACDDLGGEFCEPD 132


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
           DR+Y+ Y E KTVFPGEACDDLGGEFCE
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFCE 124



 Score = 33.5 bits (75), Expect = 8.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFC 568
           +DY  + +VFP EACD LGG+ C
Sbjct: 50  IDYSSSVSVFPMEACDLLGGDAC 72


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 125

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
           DR+Y+ Y E KTVFPGEACDDLGGEFCE
Sbjct: 84  DRDYLSYDEPKTVFPGEACDDLGGEFCE 111


>tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
           DR+Y+ Y E KTVFPGEACDDLGGEFCE
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFCE 124



 Score = 33.5 bits (75), Expect = 8.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFC 568
           +DY  + +VFP EACD LGG+ C
Sbjct: 50  IDYSSSVSVFPMEACDLLGGDAC 72