DK943725
Clone id YMU02A01NGRL0003_L24
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_L24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCATATCTCAATTCGGGCAAGAAGGTAGCCATAGCCAACACCAGACAGTTTCGGCATCGA
GGAAGCTCTTCTTTTAGTGGGTTTTCAGGAGTCAAGAGTGATTATCAAAGATTAGCGGGT
AATTAATCTCTGCATTCCCTGCATCATCATGCAAGGCGCAGCGCTGCTCACTAGCCCCGC
TGCCACTGCTGCTGCATTGACTCCCTGTGCCGCATTCCTGCGCTACACCTCCACAAATGT
GAGGTGTACCAGTCCCCTCCCCTTGTTTTCTTCAAGATCTCTGCAACAGAAGCGGCGCCC
ACTTCTTCGTGCACAGCAACAAGATCAGGATTATGTTACCTACGATGCGAAGAAATCGGT
TTTCCCTGCTGAGGCTTGTGAAGAGCTCGGTGGTGAAGCATGTGAAGTTGATGGTGTTGG
CCCTGAGGTGAAGGGCTCTGCCTCTGCTCCCAAGCAACAATCTTCGTCGAAGGCTGGGAG
TGGTCCGGATCGGGAGTACGTGGATTACAAGGAAAACAAGACTGTCTTTCCCGGAGAGGC
TTGCGATGACCTCGGAGGTGAGTTTTGCGAGCCAGAGTA
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 49.3
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943725|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L24, 5'
(579 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su... 49 1e-05

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
subsp. japonica GN=LIR1 PE=2 SV=1
Length = 128

Score = 49.3 bits (116), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
DR+Y+ Y E TVFP EACDDLGGEFC+
Sbjct: 99 DRDYLSYDEPTTVFPEEACDDLGGEFCK 126



Score = 35.8 bits (81), Expect = 0.16
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFC 568
VDY N +VFP EACD +GGE C
Sbjct: 50 VDYSSNISVFPMEACDLIGGEAC 72


tr_hit_id A7QT69
Definition tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome shotgun sequence OS=Vitis vinifera
Align length 30
Score (bit) 61.2
E-value 4.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943725|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L24, 5'
(579 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom... 61 4e-08
tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic... 61 5e-08
tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O... 60 7e-08
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea... 60 7e-08
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea... 59 1e-07
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=... 59 2e-07
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B... 58 4e-07
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ... 56 1e-06
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe... 56 2e-06
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T... 54 6e-06
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ... 54 8e-06
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ... 54 8e-06
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet... 53 1e-05
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali... 52 2e-05
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1 52 2e-05
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul... 52 3e-05
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul... 52 3e-05
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE... 50 7e-05
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1 49 2e-04
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen... 49 2e-04
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome... 49 3e-04
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P... 47 8e-04
tr|B1Q4T3|B1Q4T3_9ROSI CCR protein OS=Bruguiera gymnorhiza PE=4 ... 35 3.9

>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
PE=4 SV=1
Length = 139

Score = 61.2 bits (147), Expect = 4e-08
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCEPE 577
DREY++Y KTVFPGEACDDLGGEFCEPE
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFCEPE 130



Score = 36.2 bits (82), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFCEPE 577
VDY +VFP EAC+ +GGE C+ E
Sbjct: 52 VDYSSTTSVFPAEACEVVGGEACDAE 77


>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 144

Score = 60.8 bits (146), Expect = 5e-08
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Frame = +2

Query: 218 LRYTSTNVRCTSPLPLFSSRSLQQKRRPL-LRAQQQDQDYVTYDAKKSVFPXXXXXXXXX 394
+ + +TN+ + P L +SRS + + + D V Y++ SVFP
Sbjct: 21 ISHLATNL--SFPTKLIASRSSPPRYTAIKVVTDNSDPSTVDYNSAFSVFPAEACETVGG 78

Query: 395 XXXXVDGVGPEVXXXXXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEP 574
D + PEV +REY+DY E KTVF EACDDLGG FCEP
Sbjct: 79 DACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEP 137

Query: 575 E 577
+
Sbjct: 138 D 138


>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
OS=Picea abies GN=LIR PE=2 SV=1
Length = 117

Score = 60.5 bits (145), Expect = 7e-08
Identities = 27/31 (87%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
Frame = +2

Query: 488 DREYVDY-KENKTVFPGEACDDLGGEFCEPE 577
DREYV+Y E KTVFPGEACDDLGGEFCEPE
Sbjct: 74 DREYVEYASEQKTVFPGEACDDLGGEFCEPE 104



Score = 37.0 bits (84), Expect = 0.79
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2

Query: 500 VDYKEN-KTVFPGEACDDLGGEFCEPE 577
VDY + K+VFP EACD +GGE CE E
Sbjct: 26 VDYDSSAKSVFPAEACDTVGGEACEGE 52


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 60.5 bits (145), Expect = 7e-08
Identities = 27/31 (87%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
Frame = +2

Query: 488 DREYVDY-KENKTVFPGEACDDLGGEFCEPE 577
DREYV+Y E KTVFPGEACDDLGGEFCEPE
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFCEPE 130



Score = 37.0 bits (84), Expect = 0.79
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2

Query: 500 VDYKEN-KTVFPGEACDDLGGEFCEPE 577
VDY + K+VFP EACD +GGE CE E
Sbjct: 52 VDYDSSAKSVFPAEACDTVGGEACEGE 78


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 59.3 bits (142), Expect = 1e-07
Identities = 27/31 (87%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
Frame = +2

Query: 488 DREYVDY-KENKTVFPGEACDDLGGEFCEPE 577
DREYV+Y E KTVFPGEACDDLGGEFCEPE
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFCEPE 130



Score = 37.0 bits (84), Expect = 0.79
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2

Query: 500 VDYKEN-KTVFPGEACDDLGGEFCEPE 577
VDY + K+VFP EACD +GGE CE E
Sbjct: 52 VDYDSSAKSVFPAEACDTVGGEACEGE 78


>tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=2
SV=1
Length = 137

Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = +2

Query: 272 SRSLQQKRRPLLRAQQ----QDQDYVTYDAKKSVFPXXXXXXXXXXXXXVDGVGPEVXXX 439
+RS+ ++ + L+A+ QD V Y + SVFP V+ + PEV
Sbjct: 30 TRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVE-MYPEVKLK 88

Query: 440 XXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEPE 577
+REY+ Y KTVFP EACDDLGGEFC+PE
Sbjct: 89 PEAKKGNSVTEPV---EREYLQYDSPKTVFPAEACDDLGGEFCDPE 131


>tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein
OS=Brassica campestris PE=2 SV=1
Length = 138

Score = 57.8 bits (138), Expect = 4e-07
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCEPE 577
DREY++Y KTVFP EACDDLGGEFCEP+
Sbjct: 103 DREYLEYNNPKTVFPAEACDDLGGEFCEPD 132


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
PE=2 SV=1
Length = 138

Score = 56.2 bits (134), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
DR+Y+ Y E KTVFPGEACDDLGGEFCE
Sbjct: 97 DRDYLSYDEPKTVFPGEACDDLGGEFCE 124



Score = 33.5 bits (75), Expect = 8.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFC 568
+DY + +VFP EACD LGG+ C
Sbjct: 50 IDYSSSVSVFPMEACDLLGGDAC 72


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 125

Score = 56.2 bits (134), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
DR+Y+ Y E KTVFPGEACDDLGGEFCE
Sbjct: 84 DRDYLSYDEPKTVFPGEACDDLGGEFCE 111


>tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 138

Score = 56.2 bits (134), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2

Query: 488 DREYVDYKENKTVFPGEACDDLGGEFCE 571
DR+Y+ Y E KTVFPGEACDDLGGEFCE
Sbjct: 97 DRDYLSYDEPKTVFPGEACDDLGGEFCE 124



Score = 33.5 bits (75), Expect = 8.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2

Query: 500 VDYKENKTVFPGEACDDLGGEFC 568
+DY + +VFP EACD LGG+ C
Sbjct: 50 IDYSSSVSVFPMEACDLLGGDAC 72