DK943728
Clone id YMU02A01NGRL0003_M03
Library
Length 229
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_M03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GTATTCATGGAATGACCCATGGTGTCCCCACATTCTTTAATTTCGCATAAGGATTCCTCC
GGGACAACGTTTCTCGTAAGGTCTATTGCTGATAATTAGGCAAGCCCTATCTGCTGTTGC
TTCTGAAATGAAAGCTTTGTATGAATTGGCAGAAGCAAAGAGCTTTTAGTAGGTAATTGC
TTCATGGATGATTATGGGGTCTGCTGAAATGAGAGCTTTGCTTGATTTC
■■Homology search results ■■ -
sp_hit_id O77775
Definition sp|O77775|NCF2_BOVIN Neutrophil cytosol factor 2 OS=Bos taurus
Align length 61
Score (bit) 32.3
E-value 0.77
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943728|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_M03, 5'
(229 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O77775|NCF2_BOVIN Neutrophil cytosol factor 2 OS=Bos taurus G... 32 0.77
sp|A7E3N2|NCF2_RAT Neutrophil cytosol factor 2 OS=Rattus norvegi... 31 1.7

>sp|O77775|NCF2_BOVIN Neutrophil cytosol factor 2 OS=Bos taurus
GN=NCF2 PE=2 SV=1
Length = 527

Score = 32.3 bits (72), Expect = 0.77
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3

Query: 197 P*SSMKQLPTKSSLLLPIHTKLSFQKQQQIGLA*LSAIDLTRNVVPEESLCEIKECGDTM 18
P S ++ + K LLP HTKLS+++Q L LS + ++ C C +T+
Sbjct: 372 PYSQVRDMVAKKLDLLPEHTKLSYRRQDSNELVPLSEFSMKDAWAQVKNYCLTLWCENTV 431

Query: 17 G 15
G
Sbjct: 432 G 432


>sp|A7E3N2|NCF2_RAT Neutrophil cytosol factor 2 OS=Rattus norvegicus
GN=Ncf2 PE=2 SV=1
Length = 527

Score = 31.2 bits (69), Expect = 1.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3

Query: 197 P*SSMKQLPTKSSLLLPIHTKLSFQKQQQIGLA*LSAIDLTRNVVPEESLCEIKECGDTM 18
P S ++ + +K LLP HTKLS+Q++ L LS + ++ C C T+
Sbjct: 372 PYSQLRNMVSKKLELLPEHTKLSYQRRDSPELLLLSEESMKDAWAQVKNYCLTLWCEHTV 431

Query: 17 G 15
G
Sbjct: 432 G 432


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943728|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_M03, 5'
(229 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******