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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943737
Clone id YMU02A01NGRL0003_M12
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_M12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTGGTAGGTCTTGAGTTTAAAAGTACAAGGGGGAAGAGGTGCCGCTGTCGAGTCTGCCTT
GTTTTGTGCTGGAGCTTCTGAGCGGGCAGTGGTATTGCCAGCGGTGCTTACTGTGACGTG
GCTTGCGGCTAGCAGCCTTGCAAGCTTCTTCTAGGGATGGATGATGGCAAAGTTTCAGCA
AGCGTAGGAGAAGAAGCTCTAGAATGGGGCGTACTTCTGGAGCACAAGTAGTAACAGAAA
TTCCATTCAAGGAGACCAGTTGGCTCGGCTGGCTGATGTACATGTATGCATCACGAGTAG
CGAATGCGAGAAGCACTATTTTTTACTACAGTGTTGGATGCACTCTCGGGAGATCTGGAC
ACATACCTACTGGCTGCTACAATGATTATAGTTGAGGCTTTTTGGGTTGTACTGCAGTGT
CTTTTCTGTATTAGGGCTGGACAATGAACGGTCCTTGGCACATATATAAACTGCATTGGA
CTTGCGCAAGGCTTCCAACAACGTACTAAAAGTGCCTGCTATGGATCGAGGTTGTTCTTT
CA
■■Homology search results ■■ -
sp_hit_id Q8IWN7
Definition sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=Homo sapiens
Align length 21
Score (bit) 28.5
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943737|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_M12, 5'
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=H...    28   1.5  
sp|Q8BZB3|CO027_MOUSE Transmembrane protein C15orf27 homolog OS=...    30   7.6  

>sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=Homo
           sapiens GN=RP1L1 PE=1 SV=3
          Length = 2480

 Score = 28.5 bits (62), Expect(2) = 1.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 121 PRHSKHRWQYHCPLRSSSTKQ 59
           PRHS +R   H PL SS TKQ
Sbjct: 665 PRHSHYRKDTHSPLDSSVTKQ 685



 Score = 21.9 bits (45), Expect(2) = 1.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 221 SRSTPHSRASSPTLAETLPSSIPRRS 144
           SR++  S  SSP L    P   PR S
Sbjct: 643 SRASAMSSPSSPGLGRVAPRGHPRHS 668


>sp|Q8BZB3|CO027_MOUSE Transmembrane protein C15orf27 homolog OS=Mus
           musculus PE=2 SV=3
          Length = 538

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
 Frame = -1

Query: 287 IHVHQPAEPTGLLEWNF---------CYYLCSRSTPHSR---------ASSPTLAETLPS 162
           I +HQP  P+ L   +          C    S +T HS          ASS TL  +   
Sbjct: 357 IDIHQPNVPSDLFSVDLPLKLSGNSTCASATSETTSHSTCGSVTRAQSASSQTLGSSTDC 416

Query: 161 SIPRRSLQGC*PQATSQ*APLAIPLPAQKL 72
           S PR  L    P++    +PL + LP Q+L
Sbjct: 417 STPREELLPSKPRS----SPLPLLLPPQQL 442
tr_hit_id B6LZJ0
Definition tr|B6LZJ0|B6LZJ0_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae
Align length 70
Score (bit) 37.7
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943737|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_M12, 5'
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LZJ0|B6LZJ0_BRAFL Putative uncharacterized protein (Fragmen...    38   0.39 
tr|A9FS23|A9FS23_SORC5 Putative uncharacterized protein OS=Soran...    35   3.3  
tr|Q67SX1|Q67SX1_SYMTH Phosphate ABC transporter permease protei...    34   4.4  
tr|A9SXS9|A9SXS9_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.4  
tr|A7AU91|A7AU91_BABBO ATP-dependent DNA helicase, RecQ family p...    34   4.4  
tr|A6CFZ8|A6CFZ8_9PLAN ATP-dependent RNA helicase OS=Planctomyce...    33   7.4  
tr|B5S9V8|B5S9V8_RALSO Prolyl aminopeptidase protein OS=Ralstoni...    33   9.7  
tr|B5RY10|B5RY10_RALSO Prolyl aminopeptidase protein OS=Ralstoni...    33   9.7  
tr|A3RTN7|A3RTN7_RALSO Proline iminopeptidase OS=Ralstonia solan...    33   9.7  
tr|A8ISR9|A8ISR9_CHLRE DnaJ-like protein (Fragment) OS=Chlamydom...    33   9.7  
tr|Q22SK3|Q22SK3_TETTH Leucine Rich Repeat family protein OS=Tet...    33   9.7  

>tr|B6LZJ0|B6LZJ0_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_215807 PE=4 SV=1
          Length = 225

 Score = 37.7 bits (86), Expect = 0.39
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -1

Query: 215 STPHSRASSPTLAETLPSSIPRRSLQGC*PQATSQ*APLAIPL----PAQKLQHKTRQTR 48
           STP +     T   +L  S P+ SLQGC PQA+ Q + L + L    P   LQ  T Q  
Sbjct: 91  STPQAILQESTPQASLQKSTPQASLQGCTPQASLQGSTLQVSLQESTPQVSLQESTPQVS 150

Query: 47  QRHLFPLVLL 18
            +   P V L
Sbjct: 151 LQESTPQVSL 160


>tr|A9FS23|A9FS23_SORC5 Putative uncharacterized protein
           OS=Sorangium cellulosum (strain So ce56) GN=sce5189 PE=4
           SV=1
          Length = 579

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 26/83 (31%), Positives = 34/83 (40%)
 Frame = -1

Query: 401 KASTIIIVAASRYVSRSPESASNTVVKNSASRIRYS*CIHVHQPAEPTGLLEWNFCYYLC 222
           +A  +     SR +SR P          +AS  R      +H  AEP G      C   C
Sbjct: 43  RAEALPSAMTSRRISRCPPEGCALRQIQAASTFRAGMVCGLHSRAEPEGDDPTQLCRARC 102

Query: 221 SRSTPHSRASSPTLAETLPSSIP 153
           + S   +RAS+PT     PSS P
Sbjct: 103 AASAARARASAPTRP---PSSQP 122


>tr|Q67SX1|Q67SX1_SYMTH Phosphate ABC transporter permease protein
           OS=Symbiobacterium thermophilum GN=STH237 PE=3 SV=1
          Length = 265

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 8   VLSLKVQGGRGAAVESALFC--AGASERAVVLPAVLTVTWLAASSLA 142
           +L+    GG G+     LF   A A     +LPA+L+  WLAA SLA
Sbjct: 19  LLAALAAGGAGSLTPEFLFTLPAAAGREGGILPAILSTLWLAAGSLA 65


>tr|A9SXS9|A9SXS9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_189506 PE=4 SV=1
          Length = 981

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +2

Query: 158 WMMAKFQQA*---EKKL*NGAYF---WSTSSNRNSIQGDQLA 265
           +   KF QA    E+KL NG YF     TSSN NS+Q DQLA
Sbjct: 730 YFKGKFNQARDVYERKLWNGEYFNYDSGTSSNSNSVQADQLA 771


>tr|A7AU91|A7AU91_BABBO ATP-dependent DNA helicase, RecQ family
            protein OS=Babesia bovis GN=BBOV_II005510 PE=4 SV=1
          Length = 832

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
 Frame = -1

Query: 482  SPMQFIYVPRTV-------HCPALIQKRHCSTTQKASTIIIVAASRYVSRSPESASNTVV 324
            S M+FIY P +V       H      + +  T+   +   + +++R V  S  SAS T V
Sbjct: 693  SRMEFIYFPASVSILSTSKHAGTTATRMNLETSPTPAKKNLGSSTRRVKASG-SASTTNV 751

Query: 323  KNSASRIRYS*CIHVHQPAEPTGLLEWNFCYYLCSRS---TPHSRASSPTLAETLP 165
            K +         +++++P  P    E+N  Y + S+S   TP  R  + T  +T P
Sbjct: 752  KRATGAATSKKALNINKPFAPPTKCEFNTAYPMKSQSAPVTPAKRNYNKTGVKTTP 807


>tr|A6CFZ8|A6CFZ8_9PLAN ATP-dependent RNA helicase OS=Planctomyces
           maris DSM 8797 GN=PM8797T_16902 PE=3 SV=1
          Length = 445

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -1

Query: 191 SPTLAETLPSSIPRRSLQGC*PQATSQ*APLAIPLPAQKLQHKTRQTRQRHLFPLVLLNS 12
           +P  A+T+P+++  R + GC    T + A LA+P+   +L   +R++   H   LVL  +
Sbjct: 26  TPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPI-LNQLGKNSRKSIPHHPLALVLAPT 84

Query: 11  R 9
           R
Sbjct: 85  R 85


>tr|B5S9V8|B5S9V8_RALSO Prolyl aminopeptidase protein OS=Ralstonia
           solanacearum GN=RSIPO_04332 PE=4 SV=1
          Length = 320

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 263 ARLADVHVCITSSECEKHYFLLQCWMHSREIWTHTY 370
           A+ AD H  +  +  E HYF  +CW+  R++    Y
Sbjct: 218 AKHADDHFALAFARLENHYFTHRCWLEDRQLLRDAY 253


>tr|B5RY10|B5RY10_RALSO Prolyl aminopeptidase protein OS=Ralstonia
           solanacearum GN=RSMK04925 PE=4 SV=1
          Length = 320

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 263 ARLADVHVCITSSECEKHYFLLQCWMHSREIWTHTY 370
           A+ AD H  +  +  E HYF  +CW+  R++    Y
Sbjct: 218 AKHADDHFALAFARLENHYFTHRCWLEDRQLLRDAY 253


>tr|A3RTN7|A3RTN7_RALSO Proline iminopeptidase OS=Ralstonia
           solanacearum UW551 GN=RRSL_02867 PE=3 SV=1
          Length = 320

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 263 ARLADVHVCITSSECEKHYFLLQCWMHSREIWTHTY 370
           A+ AD H  +  +  E HYF  +CW+  R++    Y
Sbjct: 218 AKHADDHFALAFARLENHYFTHRCWLEDRQLLRDAY 253


>tr|A8ISR9|A8ISR9_CHLRE DnaJ-like protein (Fragment) OS=Chlamydomonas
            reinhardtii GN=DNJ30 PE=4 SV=1
          Length = 3321

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 159  HP*KKLARLLAASHVTVSTAGNTTARSEAPAQNKADSTAAPLPP 28
            HP K  A   AA+ VTV+TAG+T A   + A     + AAP PP
Sbjct: 3227 HPDKAAA---AAATVTVATAGDTAAAVSSSASVSVSAPAAPPPP 3267