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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943749
Clone id YMU02A01NGRL0003_N03
Library
Length 190
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAACAACGCCTGGGCTTACGCCACCAACTTCACCCCCGGAAAGTGAAACGGAGCTGTCCT
GGCTGTTCAATTGTGGCTATGGCCTTCGTCTTAAGTGGTTAAACGAATGTTGTGTAACTC
ATTGAGCTTTTTTGGCAATGTAAAGTTAAGAAATACTTTTCTTAAAAAAAAAAAAAAAAA
AAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 14
Score (bit) 36.2
E-value 0.053
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943749|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N03, 5'
         (163 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    36   0.053
sp|Q00827|CB48_MAIZE Chlorophyll a-b binding protein 48, chlorop...    34   0.20 
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...    34   0.20 
sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chlorop...    34   0.20 
sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb...    34   0.20 
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop...    34   0.20 
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl...    34   0.20 
sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloropl...    34   0.20 
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...    34   0.20 
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl...    34   0.20 
sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop...    34   0.20 
sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloropl...    34   0.20 
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...    34   0.20 
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...    34   0.20 
sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloropl...    34   0.20 
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...    34   0.20 
sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 memb...    34   0.20 
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl...    34   0.20 
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas...    34   0.20 
sp|P08222|CB22_CUCSA Chlorophyll a-b binding protein of LHCII ty...    34   0.20 
sp|P12471|CB21_SOYBN Chlorophyll a-b binding protein, chloroplas...    34   0.20 
sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chl...    34   0.20 
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl...    34   0.20 
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...    34   0.20 
sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII ty...    34   0.20 
sp|P10707|CB2D_SOLLC Chlorophyll a-b binding protein 1D (Fragmen...    33   0.44 
sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas...    33   0.44 
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop...    33   0.44 
sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloro...    33   0.44 
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl...    33   0.44 

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
           F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
           SV=1
          Length = 265

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNFTPGK
Sbjct: 252 NNAWAYATNFTPGK 265


>sp|Q00827|CB48_MAIZE Chlorophyll a-b binding protein 48,
           chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1
          Length = 264

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 251 NNAWAYATNFVPGK 264


>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member
           1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 274

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 261 NNAWAYATNFVPGK 274


>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A,
           chloroplastic OS=Pyrus pyrifolia PE=2 SV=1
          Length = 278

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 265 NNAWAYATNFVPGK 278


>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member
           1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 278

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 265 NNAWAYATNFVPGK 278


>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9,
           chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1
          Length = 265

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 252 NNAWAYATNFVPGK 265


>sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1
          Length = 267

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 254 NNAWAYATNFVPGK 267


>sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5,
           chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5
           PE=2 SV=1
          Length = 237

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 224 NNAWAYATNFVPGK 237


>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40,
           chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1
          Length = 267

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 254 NNAWAYATNFVPGK 267


>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4,
           chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1
          Length = 265

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 252 NNAWAYATNFVPGK 265
tr_hit_id Q9ZP08
Definition tr|Q9ZP08|Q9ZP08_CICAR Chlorophyll a/b binding protein OS=Cicer arietinum
Align length 14
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943749|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N03, 5'
         (163 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ZP08|Q9ZP08_CICAR Chlorophyll a/b binding protein OS=Cicer ...    34   3.2  
tr|Q9XQB3|Q9XQB3_PHAAU LHCII type I chlorophyll a/b binding prot...    34   3.2  
tr|Q9XF87|Q9XF87_ARATH Lhcb2 protein (At3g27700) (Light harvesti...    34   3.2  
tr|Q9XF73|Q9XF73_9ASPA Putative chlorophyll a/b-binding protein ...    34   3.2  
tr|Q9SWE9|Q9SWE9_9CARY Chlorophyll a/b binding protein OS=Rumex ...    34   3.2  
tr|Q9LKI0|Q9LKI0_PHAAU LHCII type I chlorophyll a/b-binding prot...    34   3.2  
tr|Q9LKH9|Q9LKH9_PHAAU LHCII type I chlorophyll a/b-binding prot...    34   3.2  
tr|Q93XK4|Q93XK4_PINCO Chlorophyll a/b binding protein OS=Pinus ...    34   3.2  
tr|Q8W0E6|Q8W0E6_ORYSJ cDNA clone:001-013-E06, full insert seque...    34   3.2  
tr|Q8RVI4|Q8RVI4_PINPS Putative chlorophyll A-B binding protein ...    34   3.2  
tr|Q5ZBV7|Q5ZBV7_ORYSJ A/b-binding protein-like OS=Oryza sativa ...    34   3.2  
tr|Q5PYQ1|Q5PYQ1_MANES Chloroplast chlorophyll A/B binding prote...    34   3.2  
tr|Q43437|Q43437_SOYBN Photosystem II type I chlorophyll a/b-bin...    34   3.2  
tr|Q41787|Q41787_MAIZE Light harvesting chlorophyll a /b binding...    34   3.2  
tr|Q41449|Q41449_SOLTU Chlorophyll a,b binding protein type I OS...    34   3.2  
tr|Q41424|Q41424_SOLTU Chlorophyll a/b binding protein OS=Solanu...    34   3.2  
tr|Q41234|Q41234_PINTH Chlorophyll a/b-binding protein OS=Pinus ...    34   3.2  
tr|Q41007|Q41007_PEA Chlorophyll a/b-binding protein (Fragment) ...    34   3.2  
tr|Q40958|Q40958_PINPA Type 2 light-harvesting chlorophyll a/b-b...    34   3.2  
tr|Q40957|Q40957_PINPA Type 1 light-harvesting chlorophyll a/b-b...    34   3.2  
tr|Q40956|Q40956_PINPA Type 2 light-harvesting chlorophyll a/b-b...    34   3.2  
tr|Q40934|Q40934_PSEMZ Light-harvesting chlorophyll a/b binding ...    34   3.2  
tr|Q40788|Q40788_PINCO Chlorophyll a/b binding protein OS=Pinus ...    34   3.2  
tr|Q40771|Q40771_PICAB Light harvesting chlorophyll a /b-binding...    34   3.2  
tr|Q40770|Q40770_PICAB Light harvesting chlorophyll a /b-binding...    34   3.2  
tr|Q40769|Q40769_PICAB Light harvesting chlorophyll a /b-binding...    34   3.2  
tr|Q40761|Q40761_PICAB Chlorophyll a/b binding protein of PS II ...    34   3.2  
tr|Q3LFQ5|Q3LFQ5_PANGI Chlorophyll a/b binding protein OS=Panax ...    34   3.2  
tr|Q39831|Q39831_SOYBN Chlorophyll a/b-binding protein OS=Glycin...    34   3.2  
tr|Q38714|Q38714_AMAHP Chloropyll a/b binding protein (Fragment)...    34   3.2  

>tr|Q9ZP08|Q9ZP08_CICAR Chlorophyll a/b binding protein OS=Cicer
           arietinum PE=2 SV=1
          Length = 266

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 253 NNAWAYATNFVPGK 266


>tr|Q9XQB3|Q9XQB3_PHAAU LHCII type I chlorophyll a/b binding protein
           OS=Phaseolus aureus GN=CipLhcb1 PE=2 SV=2
          Length = 263

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 250 NNAWAYATNFVPGK 263


>tr|Q9XF87|Q9XF87_ARATH Lhcb2 protein (At3g27700) (Light harvesting
           chlorophyll a/b-binding protein) OS=Arabidopsis thaliana
           GN=Lhcb2:4 PE=2 SV=1
          Length = 266

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 253 NNAWAYATNFVPGK 266


>tr|Q9XF73|Q9XF73_9ASPA Putative chlorophyll a/b-binding protein
           OS=Phalaenopsis hybrid cultivar PE=2 SV=1
          Length = 277

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 264 NNAWAYATNFVPGK 277


>tr|Q9SWE9|Q9SWE9_9CARY Chlorophyll a/b binding protein OS=Rumex
           palustris GN=CAB1 PE=2 SV=1
          Length = 264

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 251 NNAWAYATNFVPGK 264


>tr|Q9LKI0|Q9LKI0_PHAAU LHCII type I chlorophyll a/b-binding protein
           OS=Phaseolus aureus GN=CipLhcb1*2 PE=2 SV=1
          Length = 264

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 251 NNAWAYATNFVPGK 264


>tr|Q9LKH9|Q9LKH9_PHAAU LHCII type I chlorophyll a/b-binding protein
           OS=Phaseolus aureus GN=CipLhcb1*3 PE=2 SV=1
          Length = 264

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 251 NNAWAYATNFVPGK 264


>tr|Q93XK4|Q93XK4_PINCO Chlorophyll a/b binding protein OS=Pinus
           contorta GN=cab PE=4 SV=1
          Length = 274

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 261 NNAWAYATNFVPGK 274


>tr|Q8W0E6|Q8W0E6_ORYSJ cDNA clone:001-013-E06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0690B02.7 PE=2 SV=1
          Length = 265

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 252 NNAWAYATNFVPGK 265


>tr|Q8RVI4|Q8RVI4_PINPS Putative chlorophyll A-B binding protein
           type I (Fragment) OS=Pinus pinaster PE=2 SV=1
          Length = 195

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   NNAWAYATNFTPGK 43
           NNAWAYATNF PGK
Sbjct: 182 NNAWAYATNFVPGK 195