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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943753
Clone id YMU02A01NGRL0003_N08
Library
Length 371
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATTGGAGTAACGGTTGTGAAGCTGACGCAGACAGATGTTCCTGAAGAGGATAGGTACGGA
AATGCCACGGTGGTTGAGAACACCCAAAAAGGGTGGAAAGATCTTATTTTTCACAAGATT
CGAGCTGTTTTTGGTTGTGGACTGTGAGAAGAATACTGAGGCAGGCTATTCATTCTTTTT
GGATCATGGCTTTAAAGACTTCTTGGCCTGTTTTGATGATGGCCCGATTTCAAAAGGCCA
TGATGACAATTTAAAGTGATCAATTATGTTTCTGATAATTTCCATGCTATGGATGGTGTA
ACGATAACATGTTTAACCCCCACTTGAGCTGCTTTAAGGACNAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8N2M8
Definition sp|Q8N2M8|SFR16_HUMAN Splicing factor, arginine/serine-rich 16 OS=Homo sapiens
Align length 44
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943753|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N08, 5'
         (342 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N2M8|SFR16_HUMAN Splicing factor, arginine/serine-rich 16 O...    32   0.98 
sp|Q62786|FPRP_RAT Prostaglandin F2 receptor negative regulator ...    30   2.9  
sp|Q9WV91|FPRP_MOUSE Prostaglandin F2 receptor negative regulato...    29   8.3  

>sp|Q8N2M8|SFR16_HUMAN Splicing factor, arginine/serine-rich 16
           OS=Homo sapiens GN=SFRS16 PE=1 SV=3
          Length = 659

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 221 HHQNRPRSL*SHDPKRMNSLPQYSSHSPQPKTARIL*KIRSFHP 90
           H  +R RS  S  P R  SL +  SHSP P  +R   + RS  P
Sbjct: 474 HSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSP 517


>sp|Q62786|FPRP_RAT Prostaglandin F2 receptor negative regulator
           OS=Rattus norvegicus GN=Ptgfrn PE=1 SV=1
          Length = 879

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 250 IVIMAF*NRAIIKTGQEVFKAMIQKE*IACLSILLTVHNQKQLESCEK*DLSTLFGCSQP 71
           I++ +   + ++ TGQ  +K+ +  E ++ L  LL VH      S E  D    + CS  
Sbjct: 744 ILLSSLDRKGVVTTGQRDWKSTVSLERVSVLEFLLQVH------SSEDQDFGNYY-CSVT 796

Query: 70  PW 65
           PW
Sbjct: 797 PW 798


>sp|Q9WV91|FPRP_MOUSE Prostaglandin F2 receptor negative regulator
           OS=Mus musculus GN=Ptgfrn PE=2 SV=1
          Length = 879

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 250 IVIMAF*NRAIIKTGQEVFKAMIQKE*IACLSILLTVHNQKQLESCEK*DLSTLFGCSQP 71
           +++ +   + ++ TGQ  +K+ +  E ++ L  LL VH        E  D    + CS  
Sbjct: 744 VLLSSLDRKGVVTTGQRDWKSTVSLERVSVLEFLLQVHGS------EDQDFGNYY-CSVT 796

Query: 70  PW 65
           PW
Sbjct: 797 PW 798
tr_hit_id A9U2Z8
Definition tr|A9U2Z8|A9U2Z8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 91.7
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943753|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N08, 5'
         (342 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U2Z8|A9U2Z8_PHYPA Predicted protein OS=Physcomitrella paten...    92   2e-17
tr|A9SH81|A9SH81_PHYPA Predicted protein OS=Physcomitrella paten...    91   2e-17
tr|A9NUD8|A9NUD8_PICSI Putative uncharacterized protein OS=Picea...    88   2e-16
tr|A7PVY4|A7PVY4_VITVI Chromosome chr8 scaffold_34, whole genome...    88   2e-16
tr|A5C2M9|A5C2M9_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|Q9LHL7|Q9LHL7_ARATH Arabidopsis thaliana genomic DNA, chromos...    87   4e-16
tr|Q8L863|Q8L863_ARATH Putative uncharacterized protein At3g1205...    87   4e-16
tr|Q3EB77|Q3EB77_ARATH Uncharacterized protein At3g12050.2 OS=Ar...    87   4e-16
tr|B6U7Y1|B6U7Y1_MAIZE Activator of 90 kDa heat shock protein AT...    80   7e-14
tr|Q6YUA7|Q6YUA7_ORYSJ Os08g0464000 protein OS=Oryza sativa subs...    79   9e-14
tr|A2YW01|A2YW01_ORYSI Putative uncharacterized protein OS=Oryza...    79   9e-14
tr|B4FNW7|B4FNW7_MAIZE Activator of 90 kDa heat shock protein AT...    78   3e-13
tr|Q01GC7|Q01GC7_OSTTA DNA alkylation damage repair protein (ISS...    59   1e-07
tr|A4RRA4|A4RRA4_OSTLU Predicted protein OS=Ostreococcus lucimar...    57   4e-07
tr|A8IXT4|A8IXT4_CHLRE Predicted protein OS=Chlamydomonas reinha...    49   1e-04
tr|A8NIY8|A8NIY8_COPC7 Predicted protein OS=Coprinopsis cinerea ...    40   0.045
tr|B3L4B3|B3L4B3_PLAKH Activator of Hsp90 ATPase homolog 1-like ...    38   0.22 
tr|A5KBA0|A5KBA0_PLAVI Putative uncharacterized protein OS=Plasm...    38   0.22 
tr|Q689C4|Q689C4_PLAFA PFC0360w protein OS=Plasmodium falciparum...    35   1.4  
tr|O97256|O97256_PLAF7 Putative uncharacterized protein MAL3P3.2...    35   1.4  
tr|Q4QE21|Q4QE21_LEIMA Putative uncharacterized protein OS=Leish...    35   1.9  
tr|A4HXP7|A4HXP7_LEIIN Putative uncharacterized protein OS=Leish...    34   4.2  
tr|A4H9C6|A4H9C6_LEIBR Putative uncharacterized protein OS=Leish...    33   5.4  
tr|A5K4X7|A5K4X7_PLAVI Oxysterol-binding protein/PH domain conta...    33   9.3  
tr|Q0J2I9|Q0J2I9_ORYSJ Os09g0337300 protein OS=Oryza sativa subs...    33   9.3  
tr|A3BXN6|A3BXN6_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.3  

>tr|A9U2Z8|A9U2Z8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_227834 PE=4 SV=1
          Length = 352

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 40/48 (83%), Positives = 47/48 (97%)
 Frame = +1

Query: 1   IGVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           +G+T+VKLTQTDVP+EDRYGNATVVENT++GW+DLIFHKIRAVFG GL
Sbjct: 305 VGLTIVKLTQTDVPDEDRYGNATVVENTERGWRDLIFHKIRAVFGFGL 352


>tr|A9SH81|A9SH81_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234861 PE=4 SV=1
          Length = 352

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 41/48 (85%), Positives = 47/48 (97%)
 Frame = +1

Query: 1   IGVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           +G+TVVKLTQT+VP+EDRYGNATVVENT++GWKDLIFHKIRAVFG GL
Sbjct: 305 VGLTVVKLTQTNVPDEDRYGNATVVENTERGWKDLIFHKIRAVFGYGL 352


>tr|A9NUD8|A9NUD8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 353

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 38/48 (79%), Positives = 47/48 (97%)
 Frame = +1

Query: 1   IGVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           +GVT+VKLTQT+VPEEDR+GNATVVENT++GW++LIFHKIRAVFG G+
Sbjct: 306 VGVTIVKLTQTNVPEEDRFGNATVVENTERGWRELIFHKIRAVFGYGI 353


>tr|A7PVY4|A7PVY4_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025402001
           PE=4 SV=1
          Length = 347

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 39/47 (82%), Positives = 45/47 (95%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           G+TVVKLTQT +PEEDRYGNATVVENT++GW+DLIFHKIRAVFG G+
Sbjct: 301 GLTVVKLTQTGIPEEDRYGNATVVENTERGWRDLIFHKIRAVFGFGI 347


>tr|A5C2M9|A5C2M9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008751 PE=4 SV=1
          Length = 185

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 39/47 (82%), Positives = 45/47 (95%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           G+TVVKLTQT +PEEDRYGNATVVENT++GW+DLIFHKIRAVFG G+
Sbjct: 139 GLTVVKLTQTGIPEEDRYGNATVVENTERGWRDLIFHKIRAVFGFGI 185


>tr|Q9LHL7|Q9LHL7_ARATH Arabidopsis thaliana genomic DNA, chromosome
           3, P1 clone: MEC18 (Putative uncharacterized protein)
           (Putative uncharacterized protein T21B14.13)
           OS=Arabidopsis thaliana GN=T21B14.13 PE=2 SV=1
          Length = 360

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 38/47 (80%), Positives = 44/47 (93%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           GVT+V LT TDVPEEDRYGNATVVENT++GW+DLIFH+IRAVFG G+
Sbjct: 314 GVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI 360


>tr|Q8L863|Q8L863_ARATH Putative uncharacterized protein At3g12050
           OS=Arabidopsis thaliana GN=At3g12050 PE=2 SV=1
          Length = 360

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 38/47 (80%), Positives = 44/47 (93%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           GVT+V LT TDVPEEDRYGNATVVENT++GW+DLIFH+IRAVFG G+
Sbjct: 314 GVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI 360


>tr|Q3EB77|Q3EB77_ARATH Uncharacterized protein At3g12050.2
           OS=Arabidopsis thaliana GN=At3g12050 PE=4 SV=1
          Length = 321

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 38/47 (80%), Positives = 44/47 (93%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           GVT+V LT TDVPEEDRYGNATVVENT++GW+DLIFH+IRAVFG G+
Sbjct: 275 GVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI 321


>tr|B6U7Y1|B6U7Y1_MAIZE Activator of 90 kDa heat shock protein
           ATPase OS=Zea mays PE=2 SV=1
          Length = 348

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 33/47 (70%), Positives = 43/47 (91%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           GVT++KL QTDVPEED+YGN+TVVENT++GW++LIF +IR VFG G+
Sbjct: 302 GVTIIKLKQTDVPEEDKYGNSTVVENTERGWRELIFQRIRGVFGFGI 348


>tr|Q6YUA7|Q6YUA7_ORYSJ Os08g0464000 protein OS=Oryza sativa subsp.
           japonica GN=B1116H04.25 PE=2 SV=1
          Length = 356

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 34/47 (72%), Positives = 42/47 (89%)
 Frame = +1

Query: 4   GVTVVKLTQTDVPEEDRYGNATVVENTQKGWKDLIFHKIRAVFGCGL 144
           GVTV+ L QTDVPEEDRYGN+TVVENT++GW++LIF +IR VFG G+
Sbjct: 310 GVTVISLKQTDVPEEDRYGNSTVVENTERGWRELIFQRIRGVFGFGI 356