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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943756
Clone id YMU02A01NGRL0003_N12
Library
Length 266
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATCGTCTGCTGCAGCTTTCTAGCGATGGCGTTTCGCAAGTTTCTGAGCCTGTCCATGGC
GGGCGCGGTATGGTGCGTTGCATACAGCACAATTGCGGTGCTCCGAGGCGCCCTCCAGGT
TGTTCTTTTGAGGGTCCCAACCTGATAATCCCTGCAGTTTACTGCTAATCTCCATGTAAT
GCTTACTTTGGGTGTTGTATCTAAGCCATTAATGCTATCTATGTGAATTTCTGGGCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8R4S7
Definition sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli
Align length 49
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943756|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N12, 5'
         (218 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=A...    31   2.2  
sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=...    30   2.8  
sp|Q09350|YRU4_CAEEL Uncharacterized protein T09B9.4 OS=Caenorha...    30   4.8  
sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus ...    30   4.8  
sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus mo...    30   4.8  
sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus ca...    30   4.8  
sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus GN...    30   4.8  

>sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=Ahr
           PE=2 SV=1
          Length = 854

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 165 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHGQAQKL 19
           KHY  + S LQG +   P K  ++G    +N A CN P    H ++ +L
Sbjct: 678 KHY-HLFSSLQGTAQEFPYKPEVDGMPYTQNFAPCNQPLLPEHSKSVQL 725


>sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=Ahr
           PE=2 SV=1
          Length = 854

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 165 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHGQAQKL 19
           KHY +I S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 678 KHY-QIFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 725


>sp|Q09350|YRU4_CAEEL Uncharacterized protein T09B9.4
           OS=Caenorhabditis elegans GN=T09B9.4 PE=1 SV=1
          Length = 528

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 128 YQVGTLKRTTWRAPRSTAIVLYATHHTAPAMDRLRNLRNAI 6
           YQ    ++ TW  P  +   +Y  HHT P  D  + LR  +
Sbjct: 98  YQFLLAEQPTWFEPAPSNGTVYRVHHTTPLPDNHKKLRKEL 138


>sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus
           GN=Ahr PE=2 SV=1
          Length = 854

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 165 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHGQAQKL 19
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 678 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 725


>sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus
           molossinus GN=Ahr PE=2 SV=1
          Length = 883

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 165 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHGQAQKL 19
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 672 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 719


>sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus
           castaneus GN=Ahr PE=2 SV=1
          Length = 848

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 165 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHGQAQKL 19
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 672 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 719


>sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus
           GN=Ahr PE=1 SV=3
          Length = 848

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 165 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHGQAQKL 19
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 672 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 719
tr_hit_id B8LTT6
Definition tr|B8LTT6|B8LTT6_9EURO Putative uncharacterized protein OS=Talaromyces stipitatus ATCC 10500
Align length 34
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943756|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N12, 5'
         (218 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LTT6|B8LTT6_9EURO Putative uncharacterized protein OS=Talar...    34   4.2  

>tr|B8LTT6|B8LTT6_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_070840 PE=4
           SV=1
          Length = 440

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 103 QPGGRLGAPQLCCMQRTIPRPPWTGSETCETPSL 2
           QPG RL  P+   ++  +P PPW+ SET +  SL
Sbjct: 112 QPGRRLRIPRESSLRFEMPTPPWSPSETLQRSSL 145