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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943758
Clone id YMU02A01NGRL0003_N14
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGTACATGCATTTCATCCTTTCCTCTTTTGGAGTGCAGACTCCTTGAGCTCCTTGGAGA
GAGCTCTCCTTAGGTTTAGGGCTCATGAAGCCCTAACATGGTAGCAAAGCGTGCTCAAGG
GCGCCGGCCTATGGCGGTTCTTGATCGTGCGTGCACGCTGTGCATGGGGTGCCTCTGCGC
GCTCTTGTGTTGCTCCCGTCTGTCGTTCTGCTTGCCGGTTTGTGGTGGTTCTGGGCCGCG
CTTCTGCTCTGCTATCGTGCTTCGCTTCTGCTGTGCTGTCCTGCTTAGTGCATGAAGCCA
TGGTGACATGTCACAGGAAGAAGAATTTGCAGTATTATGAAATCTCTGCCAAGAGCAACT
ACAACTTTGAGAAACCCTTCTTGTATCTTGCCAGGAAATTAGTTGGACCTGTCTTTTCCC
ATATTTTTAGTGTTTTCAAGAGTTGTGATGAATGCTGGTGGAGTAAATTGCTTGCTTTAA
TTCTTTTTAGGGACCCCAACCTCCATTTC
■■Homology search results ■■ -
sp_hit_id Q69XM7
Definition sp|Q69XM7|RAN3_ORYSJ GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica
Align length 40
Score (bit) 73.2
E-value 7.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943758|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N14, 5'
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q69XM7|RAN3_ORYSJ GTP-binding nuclear protein Ran-3 OS=Oryza ...    73   7e-13
sp|A2YEQ6|RAN3_ORYSI GTP-binding nuclear protein Ran-3 OS=Oryza ...    73   7e-13
sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia...    72   2e-12
sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nico...    72   2e-12
sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabid...    72   2e-12
sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nico...    71   3e-12
sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum...    71   3e-12
sp|Q7GD79|RAN2_ORYSJ GTP-binding nuclear protein Ran-2 OS=Oryza ...    71   3e-12
sp|A2Y7R5|RAN2_ORYSI GTP-binding nuclear protein Ran-2 OS=Oryza ...    71   3e-12
sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabid...    71   3e-12
sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum...    71   3e-12
sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabid...    71   3e-12
sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragmen...    71   3e-12
sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragmen...    71   3e-12
sp|Q7F7I7|RAN1_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryza ...    71   3e-12
sp|A2WSI7|RAN1_ORYSI GTP-binding nuclear protein Ran-1 OS=Oryza ...    71   3e-12
sp|P28748|SPI1_SCHPO GTP-binding nuclear protein spi1 OS=Schizos...    69   1e-11
sp|Q7RVL0|GSP1_NEUCR GTP-binding nuclear protein GSP1/Ran OS=Neu...    69   1e-11
sp|Q9P4E9|GSP1_CANAL GTP-binding nuclear protein GSP1/Ran OS=Can...    69   1e-11
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 OS=Caenorh...    68   3e-11
sp|P32836|GSP2_YEAST GTP-binding nuclear protein GSP2/CNR2 OS=Sa...    67   4e-11
sp|P32835|GSP1_YEAST GTP-binding nuclear protein GSP1/CNR1 OS=Sa...    67   4e-11
sp|Q8TFK3|GSP1_YARLI GTP-binding nuclear protein GSP1/Ran OS=Yar...    67   4e-11
sp|Q6FR65|GSP1_CANGA GTP-binding nuclear protein GSP1/Ran OS=Can...    67   4e-11
sp|Q74ZA9|GSP1_ASHGO GTP-binding nuclear protein GSP1/Ran OS=Ash...    67   4e-11
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran OS=Drosophil...    67   5e-11
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran OS=Xenopus t...    67   6e-11
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran OS=Xenopus l...    67   6e-11
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran OS=Salmo sal...    67   6e-11
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran OS=Rattus norv...    67   6e-11

>sp|Q69XM7|RAN3_ORYSJ GTP-binding nuclear protein Ran-3 OS=Oryza
           sativa subsp. japonica GN=RAN3 PE=2 SV=1
          Length = 226

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 35/40 (87%), Positives = 35/40 (87%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V   MVT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 138 VKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTG 177


>sp|A2YEQ6|RAN3_ORYSI GTP-binding nuclear protein Ran-3 OS=Oryza
           sativa subsp. indica GN=RAN3 PE=2 SV=2
          Length = 226

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 35/40 (87%), Positives = 35/40 (87%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V   MVT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 138 VKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTG 177


>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia
           faba PE=2 SV=1
          Length = 221

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLH 178


>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1
           OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1
          Length = 221

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLH 178


>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3
           OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2
          Length = 221

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLH 178


>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1
           OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173


>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum
           lycopersicum GN=RAN2 PE=2 SV=1
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173


>sp|Q7GD79|RAN2_ORYSJ GTP-binding nuclear protein Ran-2 OS=Oryza
           sativa subsp. japonica GN=RAN2 PE=2 SV=1
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173


>sp|A2Y7R5|RAN2_ORYSI GTP-binding nuclear protein Ran-2 OS=Oryza
           sativa subsp. indica GN=RAN2 PE=2 SV=1
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173


>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2
           OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
tr_hit_id B3TM31
Definition tr|B3TM31|B3TM31_ELAGV GTP-binding nuclear protein Ran-A1 OS=Elaeis guineensis var. tenera
Align length 45
Score (bit) 73.6
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943758|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N14, 5'
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3TM31|B3TM31_ELAGV GTP-binding nuclear protein Ran-A1 OS=Ela...    74   5e-12
tr|A7P5N6|A7P5N6_VITVI Chromosome chr4 scaffold_6, whole genome ...    74   5e-12
tr|B8B4C1|B8B4C1_ORYSI Putative uncharacterized protein OS=Oryza...    73   7e-12
tr|A9RUE9|A9RUE9_PHYPA Ran-family small GTPase OS=Physcomitrella...    72   1e-11
tr|Q6V8M6|Q6V8M6_MALDO Small Ras-like GTP-binding protein (Fragm...    72   2e-11
tr|Q6J9G2|Q6J9G2_NICSY RAN OS=Nicotiana sylvestris GN=ran PE=2 SV=1    72   2e-11
tr|A7P7Q3|A7P7Q3_VITVI Chromosome chr9 scaffold_7, whole genome ...    72   2e-11
tr|Q9ZPJ5|Q9ZPJ5_MAIZE Ran-related GTP binding protein (Fragment...    71   3e-11
tr|Q9FSZ5|Q9FSZ5_CICAR GTP-binding protein OS=Cicer arietinum PE...    71   3e-11
tr|Q944C6|Q944C6_WHEAT Small Ras-related GTP-binding protein (Sm...    71   3e-11
tr|Q8S2Z7|Q8S2Z7_HELAN GTP-binding protein OS=Helianthus annuus ...    71   3e-11
tr|Q38M58|Q38M58_SOLTU Putative uncharacterized protein OS=Solan...    71   3e-11
tr|Q38JH1|Q38JH1_SOLTU Putative uncharacterized protein OS=Solan...    71   3e-11
tr|Q38JF9|Q38JF9_SOLTU Ran/TC4-like protein (Ran protein/TC4 pro...    71   3e-11
tr|B7FN11|B7FN11_MEDTR Putative uncharacterized protein OS=Medic...    71   3e-11
tr|B7FGV3|B7FGV3_MEDTR Putative uncharacterized protein OS=Medic...    71   3e-11
tr|B7FGN7|B7FGN7_MEDTR Putative uncharacterized protein OS=Medic...    71   3e-11
tr|B6TBX3|B6TBX3_MAIZE GTP-binding nuclear protein Ran-A1 OS=Zea...    71   3e-11
tr|B5BQV2|B5BQV2_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryz...    71   3e-11
tr|B4G1P4|B4G1P4_MAIZE GTP-binding nuclear protein Ran-A1 OS=Zea...    71   3e-11
tr|B4FEE5|B4FEE5_MAIZE Putative uncharacterized protein OS=Zea m...    71   3e-11
tr|B1Q488|B1Q488_CAPCH Putative Ran/TC4 protein OS=Capsicum chin...    71   3e-11
tr|A9X4K0|A9X4K0_ALLSA Putative RAN2 small Ras GTP-binding nucle...    71   3e-11
tr|A9X4J9|A9X4J9_ALLCE Putative RAN2 small Ras GTP-binding nucle...    71   3e-11
tr|A9PD29|A9PD29_POPTR Putative uncharacterized protein OS=Popul...    71   3e-11
tr|A9PBY8|A9PBY8_POPTR Putative uncharacterized protein OS=Popul...    71   3e-11
tr|A9PA03|A9PA03_POPTR Putative uncharacterized protein OS=Popul...    71   3e-11
tr|A8D975|A8D975_IBEAM Ran3 GTP binding protein (Fragment) OS=Ib...    71   3e-11
tr|A7PEY8|A7PEY8_VITVI Chromosome chr11 scaffold_13, whole genom...    71   3e-11
tr|A7P5N5|A7P5N5_VITVI Chromosome chr4 scaffold_6, whole genome ...    71   3e-11

>tr|B3TM31|B3TM31_ELAGV GTP-binding nuclear protein Ran-A1 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 221

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 36/45 (80%), Positives = 36/45 (80%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V   MVT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 134 VKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPSLH 178


>tr|A7P5N6|A7P5N6_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032601001
           PE=3 SV=1
          Length = 254

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 36/45 (80%), Positives = 36/45 (80%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G V  H
Sbjct: 167 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDVNLH 211


>tr|B8B4C1|B8B4C1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23598 PE=4 SV=1
          Length = 131

 Score = 73.2 bits (178), Expect = 7e-12
 Identities = 35/40 (87%), Positives = 35/40 (87%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V   MVT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 43  VKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTG 82


>tr|A9RUE9|A9RUE9_PHYPA Ran-family small GTPase OS=Physcomitrella
           patens subsp. patens GN=RanA1 PE=3 SV=1
          Length = 223

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/45 (77%), Positives = 36/45 (80%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKP+LYLARKL G V  H
Sbjct: 135 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLAGDVNLH 179


>tr|Q6V8M6|Q6V8M6_MALDO Small Ras-like GTP-binding protein
           (Fragment) OS=Malus domestica PE=2 SV=1
          Length = 183

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 96  VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLH 140


>tr|Q6J9G2|Q6J9G2_NICSY RAN OS=Nicotiana sylvestris GN=ran PE=2 SV=1
          Length = 221

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLH 178


>tr|A7P7Q3|A7P7Q3_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034551001
           PE=3 SV=1
          Length = 267

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVGPVFSH 422
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G    H
Sbjct: 180 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLH 224


>tr|Q9ZPJ5|Q9ZPJ5_MAIZE Ran-related GTP binding protein (Fragment)
           OS=Zea mays PE=2 SV=1
          Length = 170

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 83  VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 122


>tr|Q9FSZ5|Q9FSZ5_CICAR GTP-binding protein OS=Cicer arietinum PE=2
           SV=1
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173


>tr|Q944C6|Q944C6_WHEAT Small Ras-related GTP-binding protein (Small
           Ran-related GTP-binding protein) OS=Triticum aestivum
           PE=2 SV=1
          Length = 221

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 34/40 (85%), Positives = 34/40 (85%)
 Frame = +3

Query: 288 VHEAMVTCHRKKNLQYYEISAKSNYNFEKPFLYLARKLVG 407
           V    VT HRKKNLQYYEISAKSNYNFEKPFLYLARKL G
Sbjct: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173