DK943759 |
Clone id |
YMU02A01NGRL0003_N15 |
Library |
YMU02 |
Length |
466 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N15. 5' end sequence. |
Accession |
DK943759 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
TTATGGATGACAGATATGAAGCCATCACGCTTAAGCTTATGACTGTGCGCGACACTTCCC ACAACATCAAGACTCTGCTAGAGCATGCTGAAGCTATCCTCTGGGCCGCACGTGCAGAGA CCACGGCGGAGCTCAACAAGATGAACAGGGAGACGGCTCCTCAGCTTGATGCCCAGCTTC ATGAATCACGCTCAAGAATAGAGAAAGAGCTTGCAGAAGCTATTGCAAACCTAGAGGTGC AGAAGCAGGACACTTTGAAGAGCCTTGACAAGGAAGTCCAAGATCTAACTGAGGAGATTA TTGCTAAGGTCATTCCCTTCAAGATATGAGATGTGAGTTCGTCCTATTTTTTTGCTCCTT GCACTTCATTTCCGGCTGGAGCGAGAGGCCCTTTCAACAATGCCCCCTCTCGCCCTGTTG TACCCTATCATGTAATTTGTCCAAATGTCATTGCCTCTCACATTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
105 |
Score (bit) |
100.0 |
E-value |
4.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943759|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_N15, 5' (466 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 100 4e-21 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 49 1e-05 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 44 3e-04 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 40 0.005 sp|Q54G21|FKBP5_DICDI FK506-binding protein 5 OS=Dictyostelium d... 37 0.055 sp|A1E2I5|MX2_MACMU Interferon-induced GTP-binding protein Mx2 O... 35 0.16 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 35 0.16 sp|Q2KN93|CYTSA_DANRE Cytospin-A OS=Danio rerio GN=specc1l PE=2 ... 34 0.27 sp|Q9VK07|UVRAG_DROME UVRAG-like protein OS=Drosophila melanogas... 33 0.46 sp|A5IMS8|MUTS2_THEP1 MutS2 protein OS=Thermotoga petrophila (st... 33 0.46 sp|Q9X105|MUTS2_THEMA MutS2 protein OS=Thermotoga maritima GN=mu... 33 0.46 sp|Q1WUT4|METK_LACS1 S-adenosylmethionine synthetase OS=Lactobac... 33 0.46 sp|Q02206|RSC4_YEAST Chromatin structure-remodeling complex subu... 33 0.60 sp|P75471|HMW2_MYCPN Cytadherence high molecular weight protein ... 33 0.60 sp|P21263|NEST_RAT Nestin OS=Rattus norvegicus GN=Nes PE=1 SV=2 33 0.79 sp|P48681|NEST_HUMAN Nestin OS=Homo sapiens GN=NES PE=1 SV=2 33 0.79 sp|P50306|METK4_CAEEL Probable S-adenosylmethionine synthetase 4... 32 1.0 sp|P50305|METK3_CAEEL Probable S-adenosylmethionine synthetase 3... 32 1.0 sp|P19358|METK2_YEAST S-adenosylmethionine synthetase 2 OS=Sacch... 32 1.0 sp|Q7TSP2|KIF15_RAT Kinesin-like protein KIF15 OS=Rattus norvegi... 32 1.0 sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus la... 32 1.0 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 32 1.0 sp|Q27522|METK5_CAEEL Probable S-adenosylmethionine synthetase 5... 32 1.3 sp|P10659|METK1_YEAST S-adenosylmethionine synthetase 1 OS=Sacch... 32 1.3 sp|Q0U2T3|MDV1_PHANO Mitochondrial division protein 1 OS=Phaeosp... 32 1.3 sp|A3DEE4|CNPD_CLOTH 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 32 1.3 sp|P10858|YADA_YERPS Adhesin yadA OS=Yersinia pseudotuberculosis... 32 1.8 sp|P35194|UTP20_YEAST U3 small nucleolar RNA-associated protein ... 32 1.8 sp|Q805A1|SMC5_XENLA Structural maintenance of chromosomes prote... 32 1.8 sp|A8FDB6|RRF_BACP2 Ribosome-recycling factor OS=Bacillus pumilu... 32 1.8
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 100 bits (248), Expect = 4e-21 Identities = 51/105 (48%), Positives = 75/105 (71%) Frame = +3
Query: 3 MDDRYEAITLKLMTVRDTSHNIKTLLEHAEAILWAARAETTAELNKMNRETAPQLDAQLH 182 MD R +I +L V+DTS +K L E A A++ AARAE +A LNKM +ET +++A+L Sbjct: 116 MDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLA 175
Query: 183 ESRSRIEKELAEAIANLEVQKQDTLKSLDKEVQDLTEEIIAKVIP 317 E R +IE EL EA+ +LE QK+DT+KSLD ++ L+++I+ KV+P Sbjct: 176 EGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLP 220
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 48.5 bits (114), Expect = 1e-05 Identities = 31/108 (28%), Positives = 50/108 (46%) Frame = +3
Query: 3 MDDRYEAITLKLMTVRDTSHNIKTLLEHAEAILWAARAETTAELNKMNRETAPQLDAQLH 182 +D+R E I L E + AR + N E + +L Sbjct: 54 LDERKEYIQSNFNEAEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLE 113
Query: 183 ESRSRIEKELAEAIANLEVQKQDTLKSLDKEVQDLTEEIIAKVIPFKI 326 E++ + + ELA A LE+QK + LKSL+ EVQ L+ +I+ K++ +I Sbjct: 114 EAQKKADSELASATNKLELQKDEALKSLESEVQTLSTKILEKLLGIQI 161
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 43.9 bits (102), Expect = 3e-04 Identities = 28/104 (26%), Positives = 49/104 (47%) Frame = +3
Query: 3 MDDRYEAITLKLMTVRDTSHNIKTLLEHAEAILWAARAETTAELNKMNRETAPQLDAQLH 182 +D+R E I L T L E L AR ++ +E + + Sbjct: 49 LDERDEYIRTTLTTASSMLVKADELAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIK 108
Query: 183 ESRSRIEKELAEAIANLEVQKQDTLKSLDKEVQDLTEEIIAKVI 314 +++ EK +AEA L VQK++ LK+L+ +V L+++I K++ Sbjct: 109 KAQLNAEKLIAEASKQLNVQKEEALKTLENQVDTLSDQIKVKLL 152
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 40.0 bits (92), Expect = 0.005 Identities = 26/104 (25%), Positives = 49/104 (47%) Frame = +3
Query: 3 MDDRYEAITLKLMTVRDTSHNIKTLLEHAEAILWAARAETTAELNKMNRETAPQLDAQLH 182 +D+R E I L D + + + E L R E ++ +E + ++ Sbjct: 54 LDEREEYIRKNLTQASDILAKAEAITKQYEKDLAQERREAQLIISVAQKEAQDIVALEIK 113
Query: 183 ESRSRIEKELAEAIANLEVQKQDTLKSLDKEVQDLTEEIIAKVI 314 +++ E + EA + L QKQ L +L+ +V LTE+I +K++ Sbjct: 114 QAQKDTELLVNEATSQLNSQKQKALSALEDQVNTLTEQIKSKLL 157
>sp|Q54G21|FKBP5_DICDI FK506-binding protein 5 OS=Dictyostelium discoideum GN=fkbp5 PE=3 SV=1 Length = 1622
Score = 36.6 bits (83), Expect = 0.055 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Frame = +3
Query: 6 DDRYEAITLKLMTVRDTSHNIKTLLEHAEAILWAARAETTAELNKM---NRETAPQLDAQ 176 DD+ +TL++ T++DT ++ L + ++ R ET ++ N + E + Sbjct: 806 DDKVSQLTLEITTLKDTLETERSALSSVQTLVENTRLETESKFNLLLIKKEEAIAAAELS 865
Query: 177 LHESRSRIEKELA---EAIANLEVQKQDTLKSLDKEVQDL 287 L E +S+ K + + I L+ D K LD E +++ Sbjct: 866 LSEEQSKYNKLVQSNNQQIDQLQKLIDDAKKKLDHEKEEV 905
>sp|A1E2I5|MX2_MACMU Interferon-induced GTP-binding protein Mx2 OS=Macaca mulatta GN=MX2 PE=2 SV=1 Length = 715
Score = 35.0 bits (79), Expect = 0.16 Identities = 24/91 (26%), Positives = 43/91 (47%) Frame = +3
Query: 27 TLKLMTVRDTSHNIKTLLEHAEAILWAARAETTAELNKMNRETAPQLDAQLHESRSRIEK 206 T K +T T + LLE A + TAEL +++ P L+ Q+ ES + + Sbjct: 343 TKKEITFFQTHPCFRVLLEEGSATVPRLAERLTAELITHIQKSLPLLEEQIRESHQKATE 402
Query: 207 ELAEAIANLEVQKQDTLKSLDKEVQDLTEEI 299 EL A++ Q D + L ++++ ++I Sbjct: 403 ELRRCGADIPSQDADKMFFLIEKIKMFNQDI 433
>sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesterase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1465 PE=3 SV=1 Length = 574
Score = 35.0 bits (79), Expect = 0.16 Identities = 24/83 (28%), Positives = 41/83 (49%) Frame = +3
Query: 60 HNIKTLLEHAEAILWAARAETTAELNKMNRETAPQLDAQLHESRSRIEKELAEAIANLEV 239 H K L + AEA A R E AEL + + +L E+ R++ E E A Sbjct: 64 HEAKALRQEAEARAKAQREEVEAELRRRLEAAEAEAKKRLEEAGERLKAEREELRA---- 119
Query: 240 QKQDTLKSLDKEVQDLTEEIIAK 308 +++ L+SL +E+++ E + A+ Sbjct: 120 -ERERLRSLQEELKEERERLKAE 141
>sp|Q2KN93|CYTSA_DANRE Cytospin-A OS=Danio rerio GN=specc1l PE=2 SV=2 Length = 1132
Score = 34.3 bits (77), Expect = 0.27 Identities = 18/51 (35%), Positives = 33/51 (64%) Frame = +3
Query: 147 RETAPQLDAQLHESRSRIEKELAEAIANLEVQKQDTLKSLDKEVQDLTEEI 299 ++T +LDA+ + +S ++KELAE +E Q++D L+ + E+ D+ E I Sbjct: 632 QDTLNKLDAEYRDFQSVVQKELAEQKRAIEKQRED-LQEKETEIGDMKETI 681
>sp|Q9VK07|UVRAG_DROME UVRAG-like protein OS=Drosophila melanogaster GN=CG6116 PE=1 SV=1 Length = 696
Score = 33.5 bits (75), Expect = 0.46 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%) Frame = +3
Query: 9 DRYEAITLKLMTVRDTSHNIKTL-----LEHAEAILWAARAETTAELNKMNRETAPQLDA 173 ++ + L L + + I+ L L AE + R E T +L K RE Sbjct: 319 EQQQIAPLTLYNAQQLTRRIEALSSQQRLLKAERETFRQRNERTRQLLKEMREQREAQQW 378
Query: 174 QLHESRSRIEKELAE--AIANLEVQKQDTLKSLDKEVQ 281 +LH R R+EKE E +A ++++D + ++++V+ Sbjct: 379 ELHSQRHRLEKERLELRTLAPQHLEQRDQKRQIERQVE 416
>sp|A5IMS8|MUTS2_THEP1 MutS2 protein OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=mutS2 PE=3 SV=1 Length = 757
Score = 33.5 bits (75), Expect = 0.46 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +3
Query: 129 ELNKMNRETAPQLDAQLHESRSRIEKELAEAIANLEVQKQDTLKSLDKEVQDLTEEII 302 ELN R+ +LD +H +++ E+ EA+ +E +K+D + K +++ TEE I Sbjct: 561 ELNDYIRKVKKELDQAIHVAKTGSVDEMREAVKTIEKEKKDLEQ---KRIEEATEEEI 615
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
108 |
Score (bit) |
126.0 |
E-value |
6.0e-28 |
Report |
|