DK943761
Clone id YMU02A01NGRL0003_N18
Library
Length 360
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCAAGACCGCCACTGTACCTGCCAAGCTTTGCAAAAGAGAACACCAAGCAATTTCATGAT
TCGAAGATCAAATTTCCTCTAATCTTCCGCAAAATTCGCCCTCCAACAAGGAAGTTGAAA
ACCACATACAAGGCTAGCAGGCCCAATACTTTTGTCTAGGACATAGCTGTGTATGGACAA
TATAAATGTATTGGAGGCATAGTTTTCAGAAGATATGCGAAGGAATTTTTGAATACAAGA
TTGAAATTTTGTAATTTATGATCTGGTTATGCACTGTGAAGAATGCAAGTCTTCAAGAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P51418
Definition sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana
Align length 41
Score (bit) 74.7
E-value 3.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943761|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N18, 5'
(286 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsi... 75 3e-14
sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsi... 74 3e-14
sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa... 74 3e-13
sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sat... 70 8e-13
sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyosteliu... 47 2e-05
sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegi... 41 0.002
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus... 41 0.002
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens... 41 0.002
sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio ... 41 0.002
sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus G... 41 0.002
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar ... 39 0.008
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus pu... 38 0.014
sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila m... 35 0.088
sp|Q3AXE9|Y1287_SYNS9 UPF0247 protein Syncc9902_1287 OS=Synechoc... 30 2.8
sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2... 29 6.3
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabdit... 29 6.3

>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis
thaliana GN=RPL18AB PE=2 SV=2
Length = 178

Score = 74.7 bits (182), Expect(2) = 3e-14
Identities = 31/41 (75%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFH+SKIKFPL+FRK+RPP+RKLKTTYKA++PN F+
Sbjct: 138 RESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178



Score = 23.1 bits (48), Expect(2) = 3e-14
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
VPAKLCKRE
Sbjct: 131 VPAKLCKRE 139


>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis
thaliana GN=RPL18AC PE=2 SV=1
Length = 178

Score = 74.3 bits (181), Expect(2) = 3e-14
Identities = 32/41 (78%), Positives = 39/41 (95%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E TKQFH+SKIKFPL+FRK+RPP+RKLKTTYKAS+PN F+
Sbjct: 138 REITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178



Score = 23.1 bits (48), Expect(2) = 3e-14
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
VPAKLCKRE
Sbjct: 131 VPAKLCKRE 139


>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa
subsp. japonica GN=RPL18A PE=2 SV=1
Length = 178

Score = 73.6 bits (179), Expect = 3e-13
Identities = 31/41 (75%), Positives = 38/41 (92%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
++NTKQFH S IKFPL++RK+RPPTRKLKTT+KASRPN F+
Sbjct: 138 RDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178


>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa
GN=RPL18A PE=2 SV=1
Length = 178

Score = 70.1 bits (170), Expect(2) = 8e-13
Identities = 31/41 (75%), Positives = 38/41 (92%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E++KQFH+SKIKFPL+ RKIRPP+RKLKT YKASRPN F+
Sbjct: 138 RESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 8e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium
discoideum GN=rpl18a PE=3 SV=2
Length = 171

Score = 47.4 bits (111), Expect = 2e-05
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140
+ NTKQFHDSKIKFPL R K K+T+ A+RPNTF
Sbjct: 135 RANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169


>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus
GN=Rpl18a PE=2 SV=1
Length = 176

Score = 40.8 bits (94), Expect = 0.002
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3

Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140
KQFHDSKIKFPL R +R R+ K + RPNTF
Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus
GN=Rpl18a PE=2 SV=1
Length = 176

Score = 40.8 bits (94), Expect = 0.002
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3

Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140
KQFHDSKIKFPL R +R R+ K + RPNTF
Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens
GN=RPL18A PE=1 SV=2
Length = 176

Score = 40.8 bits (94), Expect = 0.002
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3

Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140
KQFHDSKIKFPL R +R R+ K + RPNTF
Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio
GN=rpl18a PE=2 SV=1
Length = 176

Score = 40.8 bits (94), Expect = 0.002
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3

Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140
KQFHDSKIKFPL R +R R+ K + RPNTF
Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus
GN=RPL18A PE=2 SV=1
Length = 176

Score = 40.8 bits (94), Expect = 0.002
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3

Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140
KQFHDSKIKFPL R +R R+ K + RPNTF
Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


tr_hit_id B3TLY0
Definition tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineensis var. tenera
Align length 41
Score (bit) 79.7
E-value 1.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943761|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_N18, 5'
(286 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineens... 80 1e-14
tr|Q677B0|Q677B0_HYAOR Ribosomal protein L18A OS=Hyacinthus orie... 78 5e-14
tr|A9P8B1|A9P8B1_POPTR Putative uncharacterized protein OS=Popul... 77 7e-14
tr|Q308A3|Q308A3_SOLTU Putative uncharacterized protein OS=Solan... 77 9e-14
tr|B3TLR7|B3TLR7_ELAGV Ribosomal protein L18a OS=Elaeis guineens... 76 2e-13
tr|A9PBF7|A9PBF7_POPTR Putative uncharacterized protein OS=Popul... 76 2e-13
tr|A9PA10|A9PA10_POPTR Putative uncharacterized protein OS=Popul... 76 2e-13
tr|A9P8L2|A9P8L2_POPTR Putative uncharacterized protein OS=Popul... 76 2e-13
tr|Q3HRW8|Q3HRW8_SOLTU Putative uncharacterized protein OS=Solan... 75 2e-13
tr|A5AZG2|A5AZG2_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-13
tr|A5AX91|A5AX91_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-13
tr|A7QQP0|A7QQP0_VITVI Chromosome undetermined scaffold_143, who... 75 2e-13
tr|A9P0B9|A9P0B9_PICSI Putative uncharacterized protein OS=Picea... 77 6e-13
tr|Q308A6|Q308A6_SOLTU Putative uncharacterized protein OS=Solan... 74 7e-13
tr|A7QSI5|A7QSI5_VITVI Chromosome undetermined scaffold_160, who... 74 9e-13
tr|A8MRF3|A8MRF3_ARATH Uncharacterized protein At1g29970.2 OS=Ar... 75 1e-12
tr|Q8L7K0|Q8L7K0_ARATH 60S ribosomal protein L18A, putative OS=A... 75 1e-12
tr|A9PDA8|A9PDA8_POPTR Putative uncharacterized protein OS=Popul... 75 2e-12
tr|B4FZ04|B4FZ04_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12
tr|B4FU90|B4FU90_MAIZE 60S ribosomal protein L18a OS=Zea mays PE... 75 2e-12
tr|B4F9R6|B4F9R6_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12
tr|A9SFY4|A9SFY4_PHYPA Predicted protein OS=Physcomitrella paten... 75 2e-12
tr|A9REV1|A9REV1_PHYPA Predicted protein OS=Physcomitrella paten... 75 2e-12
tr|Q6AUF5|Q6AUF5_ORYSJ Os05g0565000 protein OS=Oryza sativa subs... 75 2e-12
tr|A2Y7H9|A2Y7H9_ORYSI Putative uncharacterized protein OS=Oryza... 75 2e-12
tr|B6UE23|B6UE23_MAIZE 60S ribosomal protein L18a OS=Zea mays PE... 74 4e-12
tr|B6T1D8|B6T1D8_MAIZE 60S ribosomal protein L18a OS=Zea mays PE... 74 4e-12
tr|Q0JJA0|Q0JJA0_ORYSJ Os01g0752300 protein (Putative uncharacte... 74 5e-12
tr|A9S8S7|A9S8S7_PHYPA Predicted protein OS=Physcomitrella paten... 74 5e-12
tr|A2WV44|A2WV44_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12

>tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineensis
var. tenera PE=2 SV=1
Length = 178

Score = 79.7 bits (195), Expect(2) = 1e-14
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFHDSKIKFPL+F+KIRPPTRKLKTTYKASRPN F+
Sbjct: 138 RESTKQFHDSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 1e-14
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|Q677B0|Q677B0_HYAOR Ribosomal protein L18A OS=Hyacinthus
orientalis GN=RPL18 PE=2 SV=1
Length = 178

Score = 77.8 bits (190), Expect(2) = 5e-14
Identities = 33/41 (80%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFHDSKIKFPL+F+K+RPPTRKLKTT+KASRPN F+
Sbjct: 138 RESTKQFHDSKIKFPLVFKKVRPPTRKLKTTFKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 5e-14
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|A9P8B1|A9P8B1_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 178

Score = 77.4 bits (189), Expect(2) = 7e-14
Identities = 33/41 (80%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFH+SKIKFPL+F+K+RPPTRKLKTTYKASRPN F+
Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 7e-14
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|Q308A3|Q308A3_SOLTU Putative uncharacterized protein OS=Solanum
tuberosum PE=2 SV=1
Length = 178

Score = 77.0 bits (188), Expect(2) = 9e-14
Identities = 32/41 (78%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFHDSKIKFPL+F+K+RPPTRKLKTTYKA++PN F+
Sbjct: 138 RESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFM 178



Score = 22.7 bits (47), Expect(2) = 9e-14
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|B3TLR7|B3TLR7_ELAGV Ribosomal protein L18a OS=Elaeis guineensis
var. tenera PE=2 SV=1
Length = 178

Score = 75.9 bits (185), Expect(2) = 2e-13
Identities = 32/41 (78%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+
Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 2e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|A9PBF7|A9PBF7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 178

Score = 75.9 bits (185), Expect(2) = 2e-13
Identities = 32/41 (78%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+
Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 2e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|A9PA10|A9PA10_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 178

Score = 75.9 bits (185), Expect(2) = 2e-13
Identities = 32/41 (78%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+
Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 2e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|A9P8L2|A9P8L2_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 178

Score = 75.9 bits (185), Expect(2) = 2e-13
Identities = 32/41 (78%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+
Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 2e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|Q3HRW8|Q3HRW8_SOLTU Putative uncharacterized protein OS=Solanum
tuberosum PE=2 SV=1
Length = 178

Score = 75.5 bits (184), Expect(2) = 2e-13
Identities = 31/41 (75%), Positives = 40/41 (97%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E+TKQFHDSKIKFPL+F+K+RPP+RKLKTTYKA++PN F+
Sbjct: 138 RESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM 178



Score = 22.7 bits (47), Expect(2) = 2e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139


>tr|A5AZG2|A5AZG2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_019859 PE=4 SV=1
Length = 178

Score = 75.5 bits (184), Expect(2) = 2e-13
Identities = 33/41 (80%), Positives = 39/41 (95%)
Frame = +3

Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143
+E++KQFH+SKIKFPL FRK+RPPTRKLKTTYKASRPN F+
Sbjct: 138 RESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178



Score = 22.7 bits (47), Expect(2) = 2e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2

Query: 2 VPAKLCKRE 28
+PAKLCKRE
Sbjct: 131 IPAKLCKRE 139