DK943761 |
Clone id |
YMU02A01NGRL0003_N18 |
Library |
YMU02 |
Length |
360 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_N18. 5' end sequence. |
Accession |
DK943761 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL416Contig1 |
Sequence |
GCAAGACCGCCACTGTACCTGCCAAGCTTTGCAAAAGAGAACACCAAGCAATTTCATGAT TCGAAGATCAAATTTCCTCTAATCTTCCGCAAAATTCGCCCTCCAACAAGGAAGTTGAAA ACCACATACAAGGCTAGCAGGCCCAATACTTTTGTCTAGGACATAGCTGTGTATGGACAA TATAAATGTATTGGAGGCATAGTTTTCAGAAGATATGCGAAGGAATTTTTGAATACAAGA TTGAAATTTTGTAATTTATGATCTGGTTATGCACTGTGAAGAATGCAAGTCTTCAAGAGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P51418 |
Definition |
sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana |
Align length |
41 |
Score (bit) |
74.7 |
E-value |
3.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943761|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_N18, 5' (286 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsi... 75 3e-14 sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsi... 74 3e-14 sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa... 74 3e-13 sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sat... 70 8e-13 sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyosteliu... 47 2e-05 sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegi... 41 0.002 sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus... 41 0.002 sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens... 41 0.002 sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio ... 41 0.002 sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus G... 41 0.002 sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar ... 39 0.008 sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus pu... 38 0.014 sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila m... 35 0.088 sp|Q3AXE9|Y1287_SYNS9 UPF0247 protein Syncc9902_1287 OS=Synechoc... 30 2.8 sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2... 29 6.3 sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabdit... 29 6.3
>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2 Length = 178
Score = 74.7 bits (182), Expect(2) = 3e-14 Identities = 31/41 (75%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFH+SKIKFPL+FRK+RPP+RKLKTTYKA++PN F+ Sbjct: 138 RESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
Score = 23.1 bits (48), Expect(2) = 3e-14 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 VPAKLCKRE Sbjct: 131 VPAKLCKRE 139
>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1 Length = 178
Score = 74.3 bits (181), Expect(2) = 3e-14 Identities = 32/41 (78%), Positives = 39/41 (95%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E TKQFH+SKIKFPL+FRK+RPP+RKLKTTYKAS+PN F+ Sbjct: 138 REITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
Score = 23.1 bits (48), Expect(2) = 3e-14 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 VPAKLCKRE Sbjct: 131 VPAKLCKRE 139
>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1 Length = 178
Score = 73.6 bits (179), Expect = 3e-13 Identities = 31/41 (75%), Positives = 38/41 (92%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 ++NTKQFH S IKFPL++RK+RPPTRKLKTT+KASRPN F+ Sbjct: 138 RDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1 Length = 178
Score = 70.1 bits (170), Expect(2) = 8e-13 Identities = 31/41 (75%), Positives = 38/41 (92%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E++KQFH+SKIKFPL+ RKIRPP+RKLKT YKASRPN F+ Sbjct: 138 RESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 8e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2 Length = 171
Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/40 (60%), Positives = 28/40 (70%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140 + NTKQFHDSKIKFPL R K K+T+ A+RPNTF Sbjct: 135 RANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1 Length = 176
Score = 40.8 bits (94), Expect = 0.002 Identities = 21/36 (58%), Positives = 24/36 (66%) Frame = +3
Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140 KQFHDSKIKFPL R +R R+ K + RPNTF Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=2 SV=1 Length = 176
Score = 40.8 bits (94), Expect = 0.002 Identities = 21/36 (58%), Positives = 24/36 (66%) Frame = +3
Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140 KQFHDSKIKFPL R +R R+ K + RPNTF Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2 Length = 176
Score = 40.8 bits (94), Expect = 0.002 Identities = 21/36 (58%), Positives = 24/36 (66%) Frame = +3
Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140 KQFHDSKIKFPL R +R R+ K + RPNTF Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1 Length = 176
Score = 40.8 bits (94), Expect = 0.002 Identities = 21/36 (58%), Positives = 24/36 (66%) Frame = +3
Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140 KQFHDSKIKFPL R +R R+ K + RPNTF Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1 Length = 176
Score = 40.8 bits (94), Expect = 0.002 Identities = 21/36 (58%), Positives = 24/36 (66%) Frame = +3
Query: 33 KQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 140 KQFHDSKIKFPL R +R R+ K + RPNTF Sbjct: 143 KQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3TLY0 |
Definition |
tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineensis var. tenera |
Align length |
41 |
Score (bit) |
79.7 |
E-value |
1.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943761|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_N18, 5' (286 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineens... 80 1e-14 tr|Q677B0|Q677B0_HYAOR Ribosomal protein L18A OS=Hyacinthus orie... 78 5e-14 tr|A9P8B1|A9P8B1_POPTR Putative uncharacterized protein OS=Popul... 77 7e-14 tr|Q308A3|Q308A3_SOLTU Putative uncharacterized protein OS=Solan... 77 9e-14 tr|B3TLR7|B3TLR7_ELAGV Ribosomal protein L18a OS=Elaeis guineens... 76 2e-13 tr|A9PBF7|A9PBF7_POPTR Putative uncharacterized protein OS=Popul... 76 2e-13 tr|A9PA10|A9PA10_POPTR Putative uncharacterized protein OS=Popul... 76 2e-13 tr|A9P8L2|A9P8L2_POPTR Putative uncharacterized protein OS=Popul... 76 2e-13 tr|Q3HRW8|Q3HRW8_SOLTU Putative uncharacterized protein OS=Solan... 75 2e-13 tr|A5AZG2|A5AZG2_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-13 tr|A5AX91|A5AX91_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-13 tr|A7QQP0|A7QQP0_VITVI Chromosome undetermined scaffold_143, who... 75 2e-13 tr|A9P0B9|A9P0B9_PICSI Putative uncharacterized protein OS=Picea... 77 6e-13 tr|Q308A6|Q308A6_SOLTU Putative uncharacterized protein OS=Solan... 74 7e-13 tr|A7QSI5|A7QSI5_VITVI Chromosome undetermined scaffold_160, who... 74 9e-13 tr|A8MRF3|A8MRF3_ARATH Uncharacterized protein At1g29970.2 OS=Ar... 75 1e-12 tr|Q8L7K0|Q8L7K0_ARATH 60S ribosomal protein L18A, putative OS=A... 75 1e-12 tr|A9PDA8|A9PDA8_POPTR Putative uncharacterized protein OS=Popul... 75 2e-12 tr|B4FZ04|B4FZ04_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12 tr|B4FU90|B4FU90_MAIZE 60S ribosomal protein L18a OS=Zea mays PE... 75 2e-12 tr|B4F9R6|B4F9R6_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12 tr|A9SFY4|A9SFY4_PHYPA Predicted protein OS=Physcomitrella paten... 75 2e-12 tr|A9REV1|A9REV1_PHYPA Predicted protein OS=Physcomitrella paten... 75 2e-12 tr|Q6AUF5|Q6AUF5_ORYSJ Os05g0565000 protein OS=Oryza sativa subs... 75 2e-12 tr|A2Y7H9|A2Y7H9_ORYSI Putative uncharacterized protein OS=Oryza... 75 2e-12 tr|B6UE23|B6UE23_MAIZE 60S ribosomal protein L18a OS=Zea mays PE... 74 4e-12 tr|B6T1D8|B6T1D8_MAIZE 60S ribosomal protein L18a OS=Zea mays PE... 74 4e-12 tr|Q0JJA0|Q0JJA0_ORYSJ Os01g0752300 protein (Putative uncharacte... 74 5e-12 tr|A9S8S7|A9S8S7_PHYPA Predicted protein OS=Physcomitrella paten... 74 5e-12 tr|A2WV44|A2WV44_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12
>tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 178
Score = 79.7 bits (195), Expect(2) = 1e-14 Identities = 35/41 (85%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFHDSKIKFPL+F+KIRPPTRKLKTTYKASRPN F+ Sbjct: 138 RESTKQFHDSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 1e-14 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|Q677B0|Q677B0_HYAOR Ribosomal protein L18A OS=Hyacinthus orientalis GN=RPL18 PE=2 SV=1 Length = 178
Score = 77.8 bits (190), Expect(2) = 5e-14 Identities = 33/41 (80%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFHDSKIKFPL+F+K+RPPTRKLKTT+KASRPN F+ Sbjct: 138 RESTKQFHDSKIKFPLVFKKVRPPTRKLKTTFKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 5e-14 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|A9P8B1|A9P8B1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 178
Score = 77.4 bits (189), Expect(2) = 7e-14 Identities = 33/41 (80%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFH+SKIKFPL+F+K+RPPTRKLKTTYKASRPN F+ Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 7e-14 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|Q308A3|Q308A3_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 178
Score = 77.0 bits (188), Expect(2) = 9e-14 Identities = 32/41 (78%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFHDSKIKFPL+F+K+RPPTRKLKTTYKA++PN F+ Sbjct: 138 RESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFM 178
Score = 22.7 bits (47), Expect(2) = 9e-14 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|B3TLR7|B3TLR7_ELAGV Ribosomal protein L18a OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 178
Score = 75.9 bits (185), Expect(2) = 2e-13 Identities = 32/41 (78%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+ Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 2e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|A9PBF7|A9PBF7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 178
Score = 75.9 bits (185), Expect(2) = 2e-13 Identities = 32/41 (78%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+ Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 2e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|A9PA10|A9PA10_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 178
Score = 75.9 bits (185), Expect(2) = 2e-13 Identities = 32/41 (78%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+ Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 2e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|A9P8L2|A9P8L2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 178
Score = 75.9 bits (185), Expect(2) = 2e-13 Identities = 32/41 (78%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFH+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+ Sbjct: 138 RESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 2e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|Q3HRW8|Q3HRW8_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 178
Score = 75.5 bits (184), Expect(2) = 2e-13 Identities = 31/41 (75%), Positives = 40/41 (97%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E+TKQFHDSKIKFPL+F+K+RPP+RKLKTTYKA++PN F+ Sbjct: 138 RESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM 178
Score = 22.7 bits (47), Expect(2) = 2e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
>tr|A5AZG2|A5AZG2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019859 PE=4 SV=1 Length = 178
Score = 75.5 bits (184), Expect(2) = 2e-13 Identities = 33/41 (80%), Positives = 39/41 (95%) Frame = +3
Query: 21 KENTKQFHDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 143 +E++KQFH+SKIKFPL FRK+RPPTRKLKTTYKASRPN F+ Sbjct: 138 RESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178
Score = 22.7 bits (47), Expect(2) = 2e-13 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 VPAKLCKRE 28 +PAKLCKRE Sbjct: 131 IPAKLCKRE 139
|