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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943767
Clone id YMU02A01NGRL0003_O02
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_O02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATTTCACAACGCATGATGGTATAATTCAGCTTACAACAGCTTATCCAGTAGGTCGTGGCT
ATGGCGAGCGGGGTGATGAGTTTAGCGGGCACAGCAGCTCCAACGCGAGGGTATCCATCC
CTGAGACATCCTGCATCGCGTCCGGTCCTCTCTGACAGTTCCAGCTTGCATTTGCACCCG
GCTTCTTCTGCCCTAACTGCAGCTCGGGCTCTCACGTCCTCTTCTTCTTCGTGCTTCTCA
GGAGTCTCTATAGCTCCCAGGATAGGCTTCAAATGGGAGGTTCCACAGAGGAATAGTGTT
GTCAAAGTTAGGGCGGGCAAGCCAGCTTTGGGATGCACAAAAAGATCCAGATCTCGCAAG
AGTGTAGCTCGAGCTCAGGGGTTTCGGGTGCGGTTATCTTCACCTGGCGGCCGGAATGTG
TTGAGGAGGCGCCGTGCCAAAGGTAGAAGGATCCTGTGTCCCTGTAGCAACCCTAACAGT
GGCCCGCGCGCTTAAGTCTCTAATGGAGGTTGTCTCTTCTTGTTCTTACATGCTTGTAAA
GCTTCATAGAGTCTCTTTCATGTGATAACTTCACTAAGTATTTGAAAAATTAACATGCAT
TCAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LP37
Definition sp|Q9LP37|RK34_ARATH 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana
Align length 88
Score (bit) 41.6
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943767|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_O02, 5'
         (602 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LP37|RK34_ARATH 50S ribosomal protein L34, chloroplastic OS...    42   0.003
sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplastic OS...    41   0.005

>sp|Q9LP37|RK34_ARATH 50S ribosomal protein L34, chloroplastic
           OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1
          Length = 157

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +1

Query: 235 FSGVSIAPRIGFKWEV--PQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPX 408
           FSG+SIA  +  +      QR   + VRAGK AL  T        +AR  GFR R+ +  
Sbjct: 70  FSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTS 129

Query: 409 XXXXXXXXXXXXXXILCPCSNPNSGPRA 492
                          LCP SNP+SG RA
Sbjct: 130 GRATIKRRRAKGRWNLCPKSNPSSGKRA 157


>sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplastic
           OS=Spinacia oleracea GN=RPL34 PE=1 SV=1
          Length = 152

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 24/62 (38%), Positives = 30/62 (48%)
 Frame = +1

Query: 307 VRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXXXXXXXXXXXXXXILCPCSNPNSGP 486
           VRAGK AL  T        +AR  GFR+R+S+                ILC  +NP+SG 
Sbjct: 89  VRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGK 148

Query: 487 RA 492
           RA
Sbjct: 149 RA 150
tr_hit_id A9NMA1
Definition tr|A9NMA1|A9NMA1_PICSI 50S ribosomal protein L34 OS=Picea sitchensis
Align length 86
Score (bit) 67.4
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943767|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_O02, 5'
         (602 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMA1|A9NMA1_PICSI 50S ribosomal protein L34 OS=Picea sitche...    67   6e-10
tr|A9NLH0|A9NLH0_PICSI 50S ribosomal protein L34 OS=Picea sitche...    67   6e-10
tr|A9RTI4|A9RTI4_PHYPA 50S ribosomal protein L34 OS=Physcomitrel...    50   1e-04
tr|A9RX31|A9RX31_PHYPA 50S ribosomal protein L34 OS=Physcomitrel...    46   0.002
tr|B6TDD4|B6TDD4_MAIZE 50S ribosomal protein L34 OS=Zea mays PE=...    39   0.23 
tr|A5AGC2|A5AGC2_VITVI 50S ribosomal protein L34 OS=Vitis vinife...    39   0.23 
tr|Q5VQX3|Q5VQX3_ORYSJ 50S ribosomal protein L34 OS=Oryza sativa...    36   2.0  
tr|A2WW42|A2WW42_ORYSI 50S ribosomal protein L34 OS=Oryza sativa...    36   2.0  

>tr|A9NMA1|A9NMA1_PICSI 50S ribosomal protein L34 OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 36/86 (41%), Positives = 46/86 (53%)
 Frame = +1

Query: 235 FSGVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXX 414
           F+GVS+ P + F W V +R++ V VRAGK ALGCT         AR  GFR+R+ +P   
Sbjct: 58  FAGVSLRPYLNFHWMVVERSTSVMVRAGKAALGCTKRSRSRKSRARTHGFRLRMRTPGGR 117

Query: 415 XXXXXXXXXXXXILCPCSNPNSGPRA 492
                        L P +NPNSG RA
Sbjct: 118 RVVNRRRAKGRKRLVPQTNPNSGKRA 143


>tr|A9NLH0|A9NLH0_PICSI 50S ribosomal protein L34 OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 36/86 (41%), Positives = 46/86 (53%)
 Frame = +1

Query: 235 FSGVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXX 414
           F+GVS+ P + F W V +R++ V VRAGK ALGCT         AR  GFR+R+ +P   
Sbjct: 58  FAGVSLRPYLNFHWMVVERSTSVMVRAGKAALGCTKRSRSRKSRARTHGFRLRMRTPGGR 117

Query: 415 XXXXXXXXXXXXILCPCSNPNSGPRA 492
                        L P +NPNSG RA
Sbjct: 118 RVVNRRRAKGRKRLVPQTNPNSGKRA 143


>tr|A9RTI4|A9RTI4_PHYPA 50S ribosomal protein L34 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_160895 PE=3 SV=1
          Length = 186

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 31/85 (36%), Positives = 39/85 (45%)
 Frame = +1

Query: 238 SGVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXXX 417
           +GV++ P   F   + +R   + VRAG P LGCT        +AR  GFR R+SSP    
Sbjct: 103 AGVALRPTT-FGLPMVKRGVSLVVRAGSPCLGCTKRSRSRKSIARVSGFRARISSPTGRN 161

Query: 418 XXXXXXXXXXXILCPCSNPNSGPRA 492
                       L P SNP SG  A
Sbjct: 162 VLKRRRAKGRKNLVPKSNPKSGKYA 186


>tr|A9RX31|A9RX31_PHYPA 50S ribosomal protein L34 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_71675 PE=3 SV=1
          Length = 179

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 26/75 (34%), Positives = 33/75 (44%)
 Frame = +1

Query: 268 FKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXXXXXXXXXXXXX 447
           F   + +R   + VRAG P LGCT        +AR  GFR R ++P              
Sbjct: 105 FGLPIVKRGLPLVVRAGSPCLGCTKRSRSRKSIARVSGFRARTATPTGRNVLKRRRAKGR 164

Query: 448 XILCPCSNPNSGPRA 492
             L P +NPNSG  A
Sbjct: 165 KNLVPKTNPNSGKLA 179


>tr|B6TDD4|B6TDD4_MAIZE 50S ribosomal protein L34 OS=Zea mays PE=2
           SV=1
          Length = 169

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +1

Query: 235 FSGVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXX 414
           F+G S+     +     +R+  +++RAGK AL  T        +AR  GFR R+ +    
Sbjct: 82  FAGSSLGIEFSYSIMTTRRSRGMQIRAGKAALCMTKRSRSRKSLARTHGFRRRMRTTSGR 141

Query: 415 XXXXXXXXXXXXILCPCSNPNSGPR 489
                       +LC  +N NSG +
Sbjct: 142 KVLKRRRAKGRKVLCTRTNSNSGKK 166


>tr|A5AGC2|A5AGC2_VITVI 50S ribosomal protein L34 OS=Vitis vinifera
           GN=VITISV_036402 PE=3 SV=1
          Length = 148

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 232 CFS-GVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPX 408
           C S G+ +   +G + E   R   + VRAGK AL  T        +AR  GFR R+ +  
Sbjct: 64  CLSLGLDLNSSVGVRKE---RGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTS 120

Query: 409 XXXXXXXXXXXXXXILCPCSNPNSGPRA 492
                         +LC  SNP+SG RA
Sbjct: 121 GRAVLKRRRAKGRKVLCTKSNPSSGKRA 148


>tr|Q5VQX3|Q5VQX3_ORYSJ 50S ribosomal protein L34 OS=Oryza sativa
           subsp. japonica GN=P0034E02.52 PE=3 SV=1
          Length = 167

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +1

Query: 235 FSGVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXX 414
           F+G S+     +      R+ ++++RAGK AL  T        +AR  GFR R+ +    
Sbjct: 80  FAGSSLGIEFSYNRVTTGRSRILQIRAGKAALCMTKRNRSRKSLARTHGFRRRMRTTAGR 139

Query: 415 XXXXXXXXXXXXILCPCSNPNSGPR 489
                       +LC  +N  +G +
Sbjct: 140 KVLKRRRAKGRRVLCTKTNSPTGKK 164


>tr|A2WW42|A2WW42_ORYSI 50S ribosomal protein L34 OS=Oryza sativa
           subsp. indica GN=OsI_04121 PE=3 SV=1
          Length = 167

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +1

Query: 235 FSGVSIAPRIGFKWEVPQRNSVVKVRAGKPALGCTXXXXXXXXVARAQGFRVRLSSPXXX 414
           F+G S+     +      R+ ++++RAGK AL  T        +AR  GFR R+ +    
Sbjct: 80  FAGSSLGIEFSYNRVTTGRSRILQIRAGKAALCMTKRNRSRKSLARTHGFRRRMRTTAGR 139

Query: 415 XXXXXXXXXXXXILCPCSNPNSGPR 489
                       +LC  +N  +G +
Sbjct: 140 KVLKRRRAKGRRVLCTKTNSPTGKK 164