DK943779
Clone id YMU02A01NGRL0003_O18
Library
Length 354
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_O18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
CTCAGTCTTGGTCGCCAACAATCATGTCAGAGCAATCAGCGAGACCTTCACATTACTCCA
ATGAGTGGCCATTGGAACGACTCTTCTAACTGATCGTTATGGCATGGGGGCCAGCTTTCT
TTCTGCAGCTGATTTGGTGATCCAAAAGACACATCATTTCTTACAATCCAGGGTGTTGTT
TGGAGTCTATTTTTGCAAGGGTCTTTTTGAGGCAAAGAGGGCATCCAGCCTTGTGGAAAA
CTGTACAAATTGGAAGCATTTCTAGTGTATATTGCACCTTGTATCATATTCTAAGCAGCA
TACCTGTCTTTTGAGTCCTTGAATAANAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P15714
Definition sp|P15714|LP61_EIMTE Antigen LPMC-61 (Fragment) OS=Eimeria tenella
Align length 42
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943779|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_O18, 5'
(321 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P15714|LP61_EIMTE Antigen LPMC-61 (Fragment) OS=Eimeria tenel... 31 1.7
sp|P17971|KCNAL_DROME Potassium voltage-gated channel protein Sh... 29 6.3
sp|A8MXE2|YI036_HUMAN Putative UDP-GlcNAc:betaGal beta-1,3-N-ace... 29 6.3
sp|Q9XC19|TYSY_MYCGA Thymidylate synthase OS=Mycoplasma gallisep... 29 8.2
sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis th... 29 8.2

>sp|P15714|LP61_EIMTE Antigen LPMC-61 (Fragment) OS=Eimeria tenella
PE=2 SV=1
Length = 255

Score = 31.2 bits (69), Expect = 1.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2

Query: 182 QTTPWIVRNDVSFGSPNQLQKESWPPCHNDQL---EESFQWP 66
Q PW+ R QLQK+ WP QL ++ QWP
Sbjct: 26 QPQPWLDRQQQQQQHNQQLQKQQWPEGQRQQLWPEQQQQQWP 67


>sp|P17971|KCNAL_DROME Potassium voltage-gated channel protein Shal
OS=Drosophila melanogaster GN=Shal PE=1 SV=1
Length = 490

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1

Query: 211 GKEGIQPCGKLYKLEAFLVYIAPCIIF*AAYL 306
G+ G PCG+ YK+ F + A +IF A YL
Sbjct: 214 GRAGTLPCGERYKIVFFCLDTACVMIFTAEYL 245


>sp|A8MXE2|YI036_HUMAN Putative UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase ENSP00000381720
OS=Homo sapiens PE=3 SV=2
Length = 369

Score = 29.3 bits (64), Expect = 6.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3

Query: 144 KRHIISYNPGCCLESIFARVFLRQRGHPALWKTVQIGSISSVYCTLYHILS 296
KRHI YN CC + IF + P WK + G +++ T Y ++S
Sbjct: 294 KRHI-RYNR-CCYKFIFTSSEIADPEMPLAWKEINDGKECTLFETSYELIS 342


>sp|Q9XC19|TYSY_MYCGA Thymidylate synthase OS=Mycoplasma
gallisepticum GN=thyA PE=3 SV=2
Length = 289

Score = 28.9 bits (63), Expect = 8.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2

Query: 191 NRLQTTPWIVRNDVSFGSPNQLQKESWPPCHN 96
N ++T P+ R VS +P ++++ + PPCH+
Sbjct: 141 NEIKTNPFSRRLIVSAWNPGEIKEMALPPCHS 172


>sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis
thaliana GN=PIF5 PE=1 SV=1
Length = 444

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2

Query: 227 WMPSLPQKDPCKNRLQTTPWIVRNDVSFGSPNQLQKESWPPCHNDQL 87
+M +PQ P N++QT + + FGSP Q + P D L
Sbjct: 392 YMGGIPQMPPAGNQMQTVQQQPADMLGFGSPAGPQSQLSAPATTDSL 438


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943779|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_O18, 5'
(321 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******