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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943799
Clone id YMU02A01NGRL0003_P21
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_P21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AGGGAAGTAACAGCAGGGGAGCGGGGGAGGCCTCCACCAGCCATCCCTGCTCTGGAGCTG
CTTCCCCTGTTCGTGATGCCTCTAATTTTGGCCTCGCTTGGAGCAGCGATAATTGTCCAG
TCCCTGAGCAGGATCTCTGTTCCCATGGTGAGCTTCTGCAGCATGATGATGATACCTTTG
ACGGGGATGCACGAATTCAGCACCTGCTACAGGCATCTGATGACGAGCTTGGGATTCCGC
TTTCCTCTTCATCATCCGAGCTGGACGACAGCTCGTTTCATGAAGAGTGGGCTTCCCTTG
CTGACGAGACAGGGTCCTCGAATTTTAACCTCAGTTGGATCGATGGCTCCTTCCAGCAAT
TCGAGGAAGCGAGGGATCTCTATGAACATGAACCTGTCATTCTCTTCTAATTTTGCTCCG
AATTTCTTTAGCAAGTGTGGATGGGTAAGGAACTCGGGACGTCTTTTTTGTCCTCCCCCG
CCTCCCCTTCCCTGCTAACATTTTGAAGCAGAGCGGTGTACAAAATGACAGTAGTTAGTC
TCTTAAAATGTTCAAAACAAGT
■■Homology search results ■■ -
sp_hit_id P68973
Definition sp|P68973|L52_ADECR Late L1 52 kDa protein OS=Canine adenovirus serotype 1 (strain RI261)
Align length 82
Score (bit) 33.9
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943799|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_P21, 5'
         (562 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P68973|L52_ADECR Late L1 52 kDa protein OS=Canine adenovirus ...    34   0.57 
sp|P68972|L52_ADECC Late L1 52 kDa protein OS=Canine adenovirus ...    34   0.57 
sp|P11088|FILA_MOUSE Filaggrin (Fragment) OS=Mus musculus GN=Flg...    34   0.57 
sp|Q504L8|MAFB_XENTR Transcription factor MafB OS=Xenopus tropic...    33   0.97 
sp|Q8S7W9|HOX21_ORYSJ Homeobox-leucine zipper protein HOX21 OS=O...    32   1.7  
sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens GN...    32   2.2  
sp|Q58396|Y989_METJA Uncharacterized protein MJ0989 OS=Methanoca...    32   2.8  
sp|Q9LQF0|TCP23_ARATH Transcription factor TCP23 OS=Arabidopsis ...    32   2.8  
sp|P22544|BARH1_DROAN Homeobox protein B-H1 OS=Drosophila ananas...    32   2.8  
sp|P94948|Y008_METKA Uncharacterized protein MK0008 OS=Methanopy...    31   4.7  
sp|A3LYI0|NST1_PICST Stress response protein NST1 OS=Pichia stip...    31   4.8  
sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcriptio...    31   4.8  
sp|Q1GT81|PYRC_SPHAL Dihydroorotase OS=Sphingopyxis alaskensis G...    30   8.1  
sp|A3LQY1|ATG13_PICST Autophagy-related protein 13 OS=Pichia sti...    30   8.1  
sp|P57213|RNFA_BUCAI Electron transport complex protein rnfA OS=...    30   8.2  

>sp|P68973|L52_ADECR Late L1 52 kDa protein OS=Canine adenovirus
           serotype 1 (strain RI261) PE=3 SV=1
          Length = 389

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -2

Query: 291 PTLHETSCRPARMMKRKAESQARHQMPVAGAEFVHPRQRYHHHAAEAHHGNRDPAQGLDN 112
           P L +    PA ++K +AES+   ++    A  VHPR +    AAEA+     PA  +  
Sbjct: 3   PVLRQMKPLPASVVKLEAESEGLARLQGGAAPEVHPRVQMKQEAAEAY----IPASNVFR 58

Query: 111 YRCSKRGQN*RH--HEQGKQLQ 52
               +  +  RH  +E G+ L+
Sbjct: 59  DNEGEEAEGLRHLKYESGRMLR 80


>sp|P68972|L52_ADECC Late L1 52 kDa protein OS=Canine adenovirus
           serotype 1 (strain CLL) PE=3 SV=1
          Length = 389

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -2

Query: 291 PTLHETSCRPARMMKRKAESQARHQMPVAGAEFVHPRQRYHHHAAEAHHGNRDPAQGLDN 112
           P L +    PA ++K +AES+   ++    A  VHPR +    AAEA+     PA  +  
Sbjct: 3   PVLRQMKPLPASVVKLEAESEGLARLQGGAAPEVHPRVQMKQEAAEAY----IPASNVFR 58

Query: 111 YRCSKRGQN*RH--HEQGKQLQ 52
               +  +  RH  +E G+ L+
Sbjct: 59  DNEGEEAEGLRHLKYESGRMLR 80


>sp|P11088|FILA_MOUSE Filaggrin (Fragment) OS=Mus musculus GN=Flg
           PE=2 SV=1
          Length = 336

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 237 ESQARHQMPVAGAEFVHPRQRYHHHAAEAHHGNRDPAQGLDNYRCSKRGQN*RHHEQGK 61
           ES ++HQ         H +QR H H  +  H +  P  G    + S RG    H EQG+
Sbjct: 161 ESDSQHQHG-----HQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGR 214


>sp|Q504L8|MAFB_XENTR Transcription factor MafB OS=Xenopus
           tropicalis GN=mafb PE=2 SV=1
          Length = 316

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 222 HQMPVAGAEFVHPRQRYHHHAAEAHHGNRDPAQGLDNYRCSKRGQN*RHH 73
           HQMP     +   R  +HHH    HH N    QGL +       Q+  HH
Sbjct: 116 HQMPPQMQGYDSFRGHHHHHHNNHHHQNHHQYQGLPHEEMGLPHQHPHHH 165


>sp|Q8S7W9|HOX21_ORYSJ Homeobox-leucine zipper protein HOX21
           OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1
          Length = 366

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = -2

Query: 189 HPRQRYHHHAAEAHHGNRDPAQGLDNYRCSKRGQN*RHHEQGKQLQSRDGWWRPPPLP 16
           H  Q +HHH    HHG+                    HHEQ +Q Q       PPP P
Sbjct: 31  HDPQEHHHHHHHGHHGH--------------------HHEQQQQQQHHHHLGPPPPPP 68


>sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens
           GN=FOXB2 PE=2 SV=1
          Length = 432

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 189 HPRQRYHHHAAEAHHGNRDPAQ 124
           HP   +HHHAA  HH +  P Q
Sbjct: 143 HPHHHHHHHAAAHHHHHHHPPQ 164


>sp|Q58396|Y989_METJA Uncharacterized protein MJ0989
           OS=Methanocaldococcus jannaschii GN=MJ0989 PE=4 SV=1
          Length = 114

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 416 AKLEENDRFMFIEIPRFLELLEGAID-PTEVKIRGPCLVSKG 294
           AK E+N      E+P +LELL+ AI+    VK+ GPC  ++G
Sbjct: 46  AKKEQNPS----EVPNYLELLKNAIELGAVVKVCGPCCKARG 83


>sp|Q9LQF0|TCP23_ARATH Transcription factor TCP23 OS=Arabidopsis
           thaliana GN=TCP23 PE=2 SV=1
          Length = 341

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +1

Query: 79  PLILASLGAAIIVQSLSRISVPMVSFCSMMMIPLTGMHEFSTCYRHLMTSLGFRFPLHHP 258
           P I+A+ G   I  ++S +++ + S  S +  PL+         ++     GF+  L+HP
Sbjct: 104 PAIIAATGTGTIPANISTLNISLRSSGSTLSAPLSKSFHMGRAAQNAAV-FGFQQQLYHP 162

Query: 259 SWTTARFMKSGLPLLTRQ 312
              T     S LP   R+
Sbjct: 163 HHITTDSSSSSLPKTFRE 180


>sp|P22544|BARH1_DROAN Homeobox protein B-H1 OS=Drosophila ananassae
           GN=B-H1 PE=2 SV=1
          Length = 606

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 207 AGAEFVHPRQRYHHHAAEAHHGNRDPAQGLDNYRCSKRGQN*RHH 73
           A A F   +Q++HHH  ++HH N + + G      S  G +  HH
Sbjct: 99  AAAAFYKQQQQHHHHHHQSHHNNNNHSGG------SSGGTSPTHH 137


>sp|P94948|Y008_METKA Uncharacterized protein MK0008 OS=Methanopyrus
           kandleri GN=MK0008 PE=4 SV=1
          Length = 121

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 380 EIPRFLELLEGAIDP-TEVKIRGPCLVSKG 294
           E+P +LELLE  I+   EVK  GPC  ++G
Sbjct: 61  EVPNYLELLEQCIEQGAEVKACGPCSKARG 90
tr_hit_id Q5ZGH7
Definition tr|Q5ZGH7|Q5ZGH7_RICCO Putative uncharacterized protein OS=Ricinus communis
Align length 33
Score (bit) 38.1
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943799|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_P21, 5'
         (562 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ZGH7|Q5ZGH7_RICCO Putative uncharacterized protein OS=Ricin...    38   0.33 
tr|A9NTC9|A9NTC9_PICSI Putative uncharacterized protein OS=Picea...    38   0.43 
tr|B4NCB1|B4NCB1_DROWI GK25827 OS=Drosophila willistoni GN=GK258...    37   0.74 
tr|A7QEG8|A7QEG8_VITVI Chromosome chr1 scaffold_84, whole genome...    36   1.2  
tr|Q7PNK6|Q7PNK6_ANOGA AGAP000819-PA OS=Anopheles gambiae GN=AGA...    36   1.3  
tr|B4JX22|B4JX22_DROGR GH17870 OS=Drosophila grimshawi GN=GH1787...    36   1.3  
tr|Q7JWP6|Q7JWP6_DROME Lethal (3) neo26, isoform A OS=Drosophila...    36   1.6  
tr|Q5AMQ6|Q5AMQ6_CANAL Putative uncharacterized protein OS=Candi...    35   2.8  
tr|Q7PVU9|Q7PVU9_ANOGA AGAP009180-PA OS=Anopheles gambiae GN=AGA...    35   3.7  
tr|B4L1Y7|B4L1Y7_DROMO GI15899 OS=Drosophila mojavensis GN=GI158...    35   3.7  
tr|Q9C9L7|Q9C9L7_ARATH Putative uncharacterized protein T6C23.4 ...    34   4.7  
tr|A9VLA0|A9VLA0_BACWK VrrB protein OS=Bacillus weihenstephanens...    34   4.8  
tr|Q8WT68|Q8WT68_9NEOP Elongation factor-1 alpha (Fragment) OS=X...    34   4.8  
tr|B4MUE0|B4MUE0_DROWI GK14865 OS=Drosophila willistoni GN=GK148...    34   4.8  
tr|Q8R476|Q8R476_MOUSE Profilaggrin (Fragment) OS=Mus musculus G...    34   6.3  
tr|Q8C6A2|Q8C6A2_MOUSE Putative uncharacterized protein (Fragmen...    34   6.3  
tr|Q61571|Q61571_MOUSE Filaggrin (Fragment) OS=Mus musculus GN=F...    34   6.3  
tr|Q61570|Q61570_MOUSE Filaggrin (Fragment) OS=Mus musculus GN=F...    34   6.3  
tr|B5DNG4|B5DNG4_DROPS GA23375 OS=Drosophila pseudoobscura pseud...    34   6.3  
tr|B4I0K9|B4I0K9_DROSE GM12429 OS=Drosophila sechellia GN=GM1242...    34   6.3  
tr|B4H2C9|B4H2C9_DROPE GL26812 OS=Drosophila persimilis GN=GL268...    34   6.3  
tr|Q3LVG1|Q3LVG1_TAROF TO109-12 (Fragment) OS=Taraxacum officina...    33   8.1  
tr|A9NTC5|A9NTC5_PICSI Putative uncharacterized protein OS=Picea...    33   8.1  
tr|Q9PS99|Q9PS99_XENLA Nuclear factor 1 OS=Xenopus laevis PE=3 SV=1    33   8.2  
tr|Q816T1|Q816T1_BACCR VrrB OS=Bacillus cereus (strain ATCC 1457...    33   8.2  
tr|A2WE00|A2WE00_9BURK Superfamily I DNA and RNA helicase OS=Bur...    33   8.2  

>tr|Q5ZGH7|Q5ZGH7_RICCO Putative uncharacterized protein OS=Ricinus
           communis PE=2 SV=1
          Length = 180

 Score = 38.1 bits (87), Expect = 0.33
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 141 SHGELLQHDDDTFDGDARIQHLLQASDDELGIP 239
           S   +L  +D+  D D  I+HLL+ASDDELGIP
Sbjct: 94  SSSSMLLKEDEEDDKDRVIRHLLEASDDELGIP 126


>tr|A9NTC9|A9NTC9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 208

 Score = 37.7 bits (86), Expect = 0.43
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
 Frame = +3

Query: 129 QDLCSHGEL---LQHDD-------DTFDGDARIQHLLQASDDELGIPXXXXXXXXXXXXF 278
           Q  CSH  L   +Q +D       ++ D +  + +LL+ASDDELGIP             
Sbjct: 70  QPSCSHDRLNENIQLEDLLFVESANSLDTNVELGYLLEASDDELGIPPTLIGAPEDQSSS 129

Query: 279 HEEWASLADETGSSNFNLSWIDGSFQQFEEARDLYEHEPVILF*FC 416
            E  A + D +   N    W D     FE+    Y+   ++ F +C
Sbjct: 130 DESCADILDSSAVQN---EWNDDQLWPFEDEVSGYD---MLQFGYC 169


>tr|B4NCB1|B4NCB1_DROWI GK25827 OS=Drosophila willistoni GN=GK25827
            PE=4 SV=1
          Length = 1238

 Score = 37.0 bits (84), Expect = 0.74
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 246  RKAESQARHQMPVAGAEFVH-PRQRYHHHAAEAHHGNRDPAQGLDNYRCSKRGQN*RHHE 70
            +  ES  + Q+     +  H  RQRYHHH  + HH ++   Q   +Y+  ++ Q   HH 
Sbjct: 1155 KPGESHKQLQVHDMATDLRHCQRQRYHHHDHDDHHHHQQQQQQQHHYQLQQQQQ---HHH 1211

Query: 69   QGKQ 58
            Q +Q
Sbjct: 1212 QSRQ 1215


>tr|A7QEG8|A7QEG8_VITVI Chromosome chr1 scaffold_84, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037004001
           PE=4 SV=1
          Length = 156

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 114 CPVPEQDLCSHGE----LLQHDDDTFDGDARIQHLLQASDDELGIPXXXXXXXXXXXXFH 281
           CP  E+   S       +L  + +  D +  I+HLL+ASDDELGIP            FH
Sbjct: 66  CPASEECTSSSSSSSTLVLLKEGEEEDKEGFIRHLLEASDDELGIPNREVRVDDGEYGFH 125

Query: 282 E 284
           +
Sbjct: 126 D 126


>tr|Q7PNK6|Q7PNK6_ANOGA AGAP000819-PA OS=Anopheles gambiae
           GN=AGAP000819 PE=3 SV=3
          Length = 436

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
 Frame = -2

Query: 282 HETSCRPARMMKRKA-----ESQARHQMPVA-GAEFVHP----RQRYHHHAAEAHHGNRD 133
           HE   R + + K+ A     +S  RH M +  G    HP       +HHH    HH ++ 
Sbjct: 107 HERGPRSSTLRKQMALFISKDSPLRHDMMLTPGIPIPHPGHHHAHHHHHHHGHHHHHHQQ 166

Query: 132 PAQGLD 115
           PA GLD
Sbjct: 167 PAMGLD 172


>tr|B4JX22|B4JX22_DROGR GH17870 OS=Drosophila grimshawi GN=GH17870
           PE=4 SV=1
          Length = 265

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
 Frame = -2

Query: 303 QQGKPTLHETSCRPARMMKRKAESQARHQ-MPVAGAEFVHPRQRYHHHAAEAHHGNRDPA 127
           ++ KPTLHE   +   +  +  ++Q R Q +PVA  E    R+R+    +E  H  R P 
Sbjct: 142 RKSKPTLHEEMHQLVELQMQALQAQQRQQLLPVAARE----RKRHQSGKSELDHWRRTPT 197

Query: 126 QGLDNYR-------CS------KRGQN*RHHEQGKQLQSR 46
           +  +  R       CS      +R +  RH   G +L+S+
Sbjct: 198 RSRERRRDSPHRDHCSRHSSSRRRYKERRHSRSGSRLRSQ 237


>tr|Q7JWP6|Q7JWP6_DROME Lethal (3) neo26, isoform A OS=Drosophila
           melanogaster GN=l(3)neo26 PE=2 SV=1
          Length = 221

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 21  AGEASTSHPCSGAASPVRDASNFGLAWSSDNCPVPEQDLCSHGELLQHDDD 173
           +G  S+SH  + +      +S FG ++S      P+++LCSH  L Q  D+
Sbjct: 87  SGSQSSSHQSAPSLHVSGQSSEFGASYSEGGIVTPDEELCSHRSLSQDSDN 137


>tr|Q5AMQ6|Q5AMQ6_CANAL Putative uncharacterized protein OS=Candida
           albicans GN=CaO19.12059 PE=4 SV=1
          Length = 1111

 Score = 35.0 bits (79), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 249 KRKAESQARHQMPVAGAEFVHPRQRYHHHAAEAHHGNRDPAQ 124
           KR +  Q     PVAG  F+ P Q  HHH    HH + + +Q
Sbjct: 593 KRTSSKQKIKTEPVAGNPFLQPLQTSHHHHHSHHHHHEEQSQ 634


>tr|Q7PVU9|Q7PVU9_ANOGA AGAP009180-PA OS=Anopheles gambiae
            GN=AGAP009180 PE=4 SV=4
          Length = 1552

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 303  QQGKPTLHETSCRPARMMKRKAESQARHQMPVAGAEFVHPRQRYHHHAAEAHH 145
            ++G+P+    SC  + +     + Q +H  P AGA        +HHHAA  HH
Sbjct: 1183 RRGRPS----SCEHSPVYPSSPKIQLQHNHPTAGAALPPVCPHHHHHAAHHHH 1231


>tr|B4L1Y7|B4L1Y7_DROMO GI15899 OS=Drosophila mojavensis GN=GI15899
           PE=4 SV=1
          Length = 1041

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 264 PARMMKRKAESQARHQMPVAGAEFV----HPRQRYHHHAAEAHHGNRDPAQ 124
           P R M+ + E QAR +  + G   V    H  Q YHHH    HH ++   Q
Sbjct: 238 PRRRMETRLEWQARGKFKIQGGRKVRRHHHRHQHYHHHHHHPHHHHQHQHQ 288