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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943802
Clone id YMU02A01NGRL0003_P24
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_P24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AACACGAAAGTTTCTGTGATGGGAAGGGACAAGTGTGCGGTTGGTGATTTCTCAGCGTCC
ATCCGCAAGTGGCGTCCTCCTGAACCATACAAGGGCAAAGGTATTAAGTATGCAGATGAG
GTGATCCGCAGAAAAGAGGGCAAAGCCGGCAAGAAGAAATAAGTATTTTCTGCAGTATCC
TCTTTGTCTCTCTGCTTTTTTTTTTTTTCAAAAGGGACTTCAGTTTTGGATGGGCTGGAA
TTTTTTGATTATGTGATGCGTCATCACGGGCAATGTAATATGCTGGTATTTTCAAACTCA
ATAGGCCTATTGTGAAGGTGAAATGTTGGATGTATCAATCATGTGACAGGGGAACCCCTT
TATGATCTCTGTTTCACCTTTCAAAGAAAAGAACTGGCTACCTAGCCCATGGCGGTGTAT
TGCAGCATGAAATGATAAGGTTCTTCTTCTGACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
■■Homology search results ■■ -
sp_hit_id O23049
Definition sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana
Align length 44
Score (bit) 74.3
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943802|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_P24, 5'
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=A...    74   2e-13
sp|Q250L7|RL6_DESHY 50S ribosomal protein L6 OS=Desulfitobacteri...    65   2e-10
sp|Q0SQF9|RL6_CLOPS 50S ribosomal protein L6 OS=Clostridium perf...    64   3e-10
sp|Q8XHT8|RL6_CLOPE 50S ribosomal protein L6 OS=Clostridium perf...    64   3e-10
sp|Q0TMR1|RL6_CLOP1 50S ribosomal protein L6 OS=Clostridium perf...    64   3e-10
sp|A7GJ59|RL6_CLOBL 50S ribosomal protein L6 OS=Clostridium botu...    64   3e-10
sp|A5I7J1|RL6_CLOBH 50S ribosomal protein L6 OS=Clostridium botu...    64   3e-10
sp|A7FZ54|RL6_CLOB1 50S ribosomal protein L6 OS=Clostridium botu...    64   3e-10
sp|Q18CH5|RL6_CLOD6 50S ribosomal protein L6 OS=Clostridium diff...    64   4e-10
sp|A9WSU3|RL6_RENSM 50S ribosomal protein L6 OS=Renibacterium sa...    63   5e-10
sp|Q9Z7S1|RL6_CHLPN 50S ribosomal protein L6 OS=Chlamydia pneumo...    63   5e-10
sp|A0PXW1|RL6_CLONN 50S ribosomal protein L6 OS=Clostridium novy...    63   7e-10
sp|Q15X58|RL6_PSEA6 50S ribosomal protein L6 OS=Pseudoalteromona...    62   9e-10
sp|Q83G00|RL6_TROWT 50S ribosomal protein L6 OS=Tropheryma whipp...    62   1e-09
sp|Q83I64|RL6_TROW8 50S ribosomal protein L6 OS=Tropheryma whipp...    62   1e-09
sp|Q6AD09|RL6_LEIXX 50S ribosomal protein L6 OS=Leifsonia xyli s...    62   2e-09
sp|A5N4R2|RL6_CLOK5 50S ribosomal protein L6 OS=Clostridium kluy...    62   2e-09
sp|Q3BWW8|RL6_XANC5 50S ribosomal protein L6 OS=Xanthomonas camp...    61   2e-09
sp|A6W377|RL6_MARMS 50S ribosomal protein L6 OS=Marinomonas sp. ...    61   2e-09
sp|A1TYL2|RL6_MARAV 50S ribosomal protein L6 OS=Marinobacter aqu...    61   2e-09
sp|A6TWG7|RL6_ALKMQ 50S ribosomal protein L6 OS=Alkaliphilus met...    61   2e-09
sp|A9NEE8|RL6_ACHLI 50S ribosomal protein L6 OS=Acholeplasma lai...    61   2e-09
sp|A1ALV6|RL6_PELPD 50S ribosomal protein L6 OS=Pelobacter propi...    61   3e-09
sp|A6LPS6|RL6_CLOB8 50S ribosomal protein L6 OS=Clostridium beij...    61   3e-09
sp|Q88QM0|RL6_PSEPK 50S ribosomal protein L6 OS=Pseudomonas puti...    60   4e-09
sp|B0KK82|RL6_PSEPG 50S ribosomal protein L6 OS=Pseudomonas puti...    60   4e-09
sp|Q3K603|RL6_PSEPF 50S ribosomal protein L6 OS=Pseudomonas fluo...    60   4e-09
sp|A5VXR2|RL6_PSEP1 50S ribosomal protein L6 OS=Pseudomonas puti...    60   4e-09
sp|Q4K548|RL6_PSEF5 50S ribosomal protein L6 OS=Pseudomonas fluo...    60   4e-09
sp|Q9HWF0|RL6_PSEAE 50S ribosomal protein L6 OS=Pseudomonas aeru...    60   4e-09

>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic
           OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1
          Length = 223

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 28/44 (63%), Positives = 39/44 (88%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT+++V G DK  +G F+A++RKWRPPEPYKGKG+KY+DE++RR
Sbjct: 171 NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRR 214


>sp|Q250L7|RL6_DESHY 50S ribosomal protein L6 OS=Desulfitobacterium
           hafniense (strain Y51) GN=rplF PE=3 SV=1
          Length = 184

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 30/42 (71%), Positives = 34/42 (80%)
 Frame = +1

Query: 7   KVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           K+ V G DK  VGDF+A IRK RPPEPYKGKGIKY +EV+RR
Sbjct: 130 KIIVKGMDKELVGDFAAEIRKERPPEPYKGKGIKYENEVVRR 171


>sp|Q0SQF9|RL6_CLOPS 50S ribosomal protein L6 OS=Clostridium
           perfringens (strain SM101 / Type A) GN=rplF PE=3 SV=1
          Length = 179

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 34/43 (79%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TKV V G DK  VG  +A+IR WR PEPYKGKGIKY+DEVIRR
Sbjct: 130 TKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRR 172


>sp|Q8XHT8|RL6_CLOPE 50S ribosomal protein L6 OS=Clostridium
           perfringens GN=rplF PE=3 SV=1
          Length = 179

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 34/43 (79%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TKV V G DK  VG  +A+IR WR PEPYKGKGIKY+DEVIRR
Sbjct: 130 TKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRR 172


>sp|Q0TMR1|RL6_CLOP1 50S ribosomal protein L6 OS=Clostridium
           perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
           GN=rplF PE=3 SV=1
          Length = 179

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 34/43 (79%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TKV V G DK  VG  +A+IR WR PEPYKGKGIKY+DEVIRR
Sbjct: 130 TKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRR 172


>sp|A7GJ59|RL6_CLOBL 50S ribosomal protein L6 OS=Clostridium
           botulinum (strain Langeland / NCTC 10281 / Type F)
           GN=rplF PE=3 SV=1
          Length = 180

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 33/43 (76%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TKV V G DK  VG  +A IRKWR PEPYKGKGIKY +EVIRR
Sbjct: 130 TKVKVKGIDKELVGAVAADIRKWRKPEPYKGKGIKYENEVIRR 172


>sp|A5I7J1|RL6_CLOBH 50S ribosomal protein L6 OS=Clostridium
           botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
           A) GN=rplF PE=3 SV=1
          Length = 180

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 33/43 (76%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TKV V G DK  VG  +A IRKWR PEPYKGKGIKY +EVIRR
Sbjct: 130 TKVKVKGIDKELVGAVAADIRKWRKPEPYKGKGIKYENEVIRR 172


>sp|A7FZ54|RL6_CLOB1 50S ribosomal protein L6 OS=Clostridium
           botulinum (strain ATCC 19397 / Type A) GN=rplF PE=3 SV=1
          Length = 180

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 33/43 (76%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TKV V G DK  VG  +A IRKWR PEPYKGKGIKY +EVIRR
Sbjct: 130 TKVKVKGIDKELVGAVAADIRKWRKPEPYKGKGIKYENEVIRR 172


>sp|Q18CH5|RL6_CLOD6 50S ribosomal protein L6 OS=Clostridium
           difficile (strain 630) GN=rplF PE=3 SV=1
          Length = 180

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 29/43 (67%), Positives = 34/43 (79%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           T++ V G DK  VG+++A IR WR PEPYKGKGIKY DEVIRR
Sbjct: 130 TELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRR 172


>sp|A9WSU3|RL6_RENSM 50S ribosomal protein L6 OS=Renibacterium
           salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)
           GN=rplF PE=3 SV=1
          Length = 178

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 30/43 (69%), Positives = 36/43 (83%)
 Frame = +1

Query: 4   TKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           TK+SV G DK  VG+ +A+IRK R P+PYKGKGI+YADEVIRR
Sbjct: 129 TKLSVAGIDKQQVGEVAANIRKLRKPDPYKGKGIRYADEVIRR 171
tr_hit_id A9U246
Definition tr|A9U246|A9U246_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 85.9
E-value 9.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943802|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_P24, 5'
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U246|A9U246_PHYPA Predicted protein OS=Physcomitrella paten...    86   9e-16
tr|A9SYQ3|A9SYQ3_PHYPA Predicted protein OS=Physcomitrella paten...    84   3e-15
tr|A9NKY9|A9NKY9_PICSI Putative uncharacterized protein OS=Picea...    79   9e-14
tr|A7PXG7|A7PXG7_VITVI Chromosome chr12 scaffold_36, whole genom...    79   1e-13
tr|Q850L8|Q850L8_ORYSJ Os03g0751400 protein OS=Oryza sativa subs...    74   3e-12
tr|Q7Y029|Q7Y029_ORYSJ Putative ribosomal protein CtrL6e, 5'-par...    74   3e-12
tr|B6UCF0|B6UCF0_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2...    74   3e-12
tr|B6SMY4|B6SMY4_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2...    74   3e-12
tr|B6SL57|B6SL57_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2...    74   3e-12
tr|A2XM21|A2XM21_ORYSI Putative uncharacterized protein OS=Oryza...    74   3e-12
tr|Q10L93|Q10L93_ORYSJ Os03g0356300 protein OS=Oryza sativa subs...    74   4e-12
tr|A3AI13|A3AI13_ORYSJ Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|A2XGS7|A2XGS7_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|B6T4J1|B6T4J1_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2...    73   6e-12
tr|B8G1Y1|B8G1Y1_DESHD Ribosomal protein L6 OS=Desulfitobacteriu...    65   2e-09
tr|B1KSL0|B1KSL0_CLOBM 50S ribosomal protein L6 OS=Clostridium b...    64   4e-09
tr|B1IGD9|B1IGD9_CLOBK 50S ribosomal protein L6 OS=Clostridium b...    64   4e-09
tr|B1V774|B1V774_CLOPE Ribosomal protein L6 OS=Clostridium perfr...    64   4e-09
tr|B1RP85|B1RP85_CLOPE Ribosomal protein L6 OS=Clostridium perfr...    64   4e-09
tr|B1RKD2|B1RKD2_CLOPE Ribosomal protein L6 OS=Clostridium perfr...    64   4e-09
tr|B1RBP4|B1RBP4_CLOPE Ribosomal protein L6 OS=Clostridium perfr...    64   4e-09
tr|B1QHM1|B1QHM1_CLOBO Ribosomal protein L6 OS=Clostridium botul...    64   4e-09
tr|B1Q999|B1Q999_CLOBO Ribosomal protein L6 OS=Clostridium botul...    64   4e-09
tr|B1BQP8|B1BQP8_CLOPE 50S ribosomal protein L6 OS=Clostridium p...    64   4e-09
tr|B1BMJ3|B1BMJ3_CLOPE 50S ribosomal protein L6 OS=Clostridium p...    64   4e-09
tr|A6NXE5|A6NXE5_9BACE 50S ribosomal protein L6 OS=Bacteroides c...    63   6e-09
tr|B5RPJ7|B5RPJ7_BORRA 50S ribosomal protein L6 OS=Borrelia recu...    63   8e-09
tr|B5RM51|B5RM51_BORDL 50S ribosomal protein L6 OS=Borrelia dutt...    63   8e-09
tr|B5EFR5|B5EFR5_GEOBB Ribosomal protein L6 OS=Geobacter bemidji...    63   8e-09
tr|B8KWH7|B8KWH7_9GAMM 50S ribosomal protein L6 OS=gamma proteob...    63   8e-09

>tr|A9U246|A9U246_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200465 PE=3 SV=1
          Length = 229

 Score = 85.9 bits (211), Expect = 9e-16
 Identities = 37/44 (84%), Positives = 42/44 (95%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT+V V G+DKCAVGDFSA++RKWRPPEPYKGKGIKY+DEVIRR
Sbjct: 177 NTRVIVSGKDKCAVGDFSAAVRKWRPPEPYKGKGIKYSDEVIRR 220


>tr|A9SYQ3|A9SYQ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_110132 PE=3 SV=1
          Length = 230

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 35/44 (79%), Positives = 42/44 (95%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT+V + G+DKC+VGDFSA++RKWRPPEPYKGKGIKY+DEVIRR
Sbjct: 178 NTRVLISGKDKCSVGDFSAAVRKWRPPEPYKGKGIKYSDEVIRR 221


>tr|A9NKY9|A9NKY9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 231

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 35/44 (79%), Positives = 38/44 (86%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT ++V GRDK  VG F+A IRKWRPPEPYKGKGIKYADEVIRR
Sbjct: 179 NTSITVSGRDKSVVGQFAADIRKWRPPEPYKGKGIKYADEVIRR 222


>tr|A7PXG7|A7PXG7_VITVI Chromosome chr12 scaffold_36, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026031001
           PE=3 SV=1
          Length = 117

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 31/44 (70%), Positives = 39/44 (88%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT++ V G DKC +G F+AS+RKWRPPEPYKGKG+KYADE++RR
Sbjct: 65  NTRIIVSGYDKCNIGQFAASVRKWRPPEPYKGKGVKYADEIVRR 108


>tr|Q850L8|Q850L8_ORYSJ Os03g0751400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0032E21.12 PE=2 SV=1
          Length = 226

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT++ V G DK  +G F+ASI+KWRPPEPYKGKGI+YADEV+RR
Sbjct: 174 NTRIIVSGYDKSEIGQFAASIKKWRPPEPYKGKGIRYADEVVRR 217


>tr|Q7Y029|Q7Y029_ORYSJ Putative ribosomal protein CtrL6e,
           5'-partial (Fragment) OS=Oryza sativa subsp. japonica
           GN=OJ1112_G08.1 PE=3 SV=1
          Length = 111

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT++ V G DK  +G F+ASI+KWRPPEPYKGKGI+YADEV+RR
Sbjct: 59  NTRIIVSGYDKSEIGQFAASIKKWRPPEPYKGKGIRYADEVVRR 102


>tr|B6UCF0|B6UCF0_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2
           SV=1
          Length = 226

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 30/44 (68%), Positives = 39/44 (88%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT+++V G DK A+G F+A+I+KWRPPEPYKGKGI+Y DEV+RR
Sbjct: 174 NTRITVSGYDKSAIGQFAATIKKWRPPEPYKGKGIRYMDEVVRR 217


>tr|B6SMY4|B6SMY4_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2
           SV=1
          Length = 223

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 28/44 (63%), Positives = 39/44 (88%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT+++V G DK  +G F+A++RKWRPPEPYKGKG+KY+DE++RR
Sbjct: 171 NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRR 214


>tr|B6SL57|B6SL57_MAIZE 50S ribosomal protein L6 OS=Zea mays PE=2
           SV=1
          Length = 224

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 28/44 (63%), Positives = 39/44 (88%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT+++V G DK  +G F+A++RKWRPPEPYKGKG+KY+DE++RR
Sbjct: 172 NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRR 215


>tr|A2XM21|A2XM21_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13529 PE=3 SV=1
          Length = 226

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +1

Query: 1   NTKVSVMGRDKCAVGDFSASIRKWRPPEPYKGKGIKYADEVIRR 132
           NT++ V G DK  +G F+ASI+KWRPPEPYKGKGI+YADEV+RR
Sbjct: 174 NTRIIVSGYDKSEIGQFAASIKKWRPPEPYKGKGIRYADEVVRR 217