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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943807
Clone id YMU02A01NGRL0004_A07
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_A07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTAGTTTATGATGCATGTTTTCTTTTTGTTCTTGAAGGTGTAAAGCTGAGATGAAGCTCC
AATAGAAGATATTTCTGCTCAGATAGATGTGCTGATATGTGCTGCTTATTCTCAGAGTTT
CCACTCGTCAGCATATTTGCGGAGTCCTGTTTCTGAGAGCTCTCGATGTGGTGAGGCTCC
CAATGTGGGAATTTTCATTTAGAAGAAGATCATGCTCACAAGAGGTTTTAGGAAATTCCA
AGGTCAGTCACAACAAAGGCTGCATTTGTTGAGTAGATAACGGAAGCTTGCTGAATTTTA
CTGGCACTATTCTCCAAACCATCGGAGTACATGCAGAAGGGAAAACACATTTCCATACAC
TGCCAATGGCATAGTTTGTCAAGAACATTGCTAAGCAAACCACACACATTCACCTCGCTG
CTTGACCATAGAAAACTCAAAACTGCATCAAGCTTAACTTTTGACTGTACACTGTAAACC
ACTCATTGCAGGACACCCCTTGTCTAGTATTAAAAATGTGGCCCACATGCCCAACTATTT
GTTGTTTTGCTCA
■■Homology search results ■■ -
sp_hit_id P85120
Definition sp|P85120|DAPLE_XENLA Daple-like protein OS=Xenopus laevis
Align length 35
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943807|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A07, 5'
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P85120|DAPLE_XENLA Daple-like protein OS=Xenopus laevis GN=cc...    33   1.2  
sp|A4TGP0|MTLD_YERPP Mannitol-1-phosphate 5-dehydrogenase OS=Yer...    31   3.5  
sp|Q1CD89|MTLD_YERPN Mannitol-1-phosphate 5-dehydrogenase OS=Yer...    31   3.5  
sp|Q8Z9X0|MTLD_YERPE Mannitol-1-phosphate 5-dehydrogenase OS=Yer...    31   3.5  
sp|Q1C3J5|MTLD_YERPA Mannitol-1-phosphate 5-dehydrogenase OS=Yer...    31   3.5  
sp|A7FP92|MTLD_YERP3 Mannitol-1-phosphate 5-dehydrogenase OS=Yer...    31   3.5  

>sp|P85120|DAPLE_XENLA Daple-like protein OS=Xenopus laevis
           GN=ccdc88c PE=1 SV=1
          Length = 2058

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -3

Query: 176 PHHIESSQKQDSANMLTSGNSENKQHISAHLSEQK 72
           P  ++SS    SANM++  +SE+K+H++  L+E K
Sbjct: 226 PSPVKSSSPDTSANMVSHLSSEDKKHLAVELAESK 260


>sp|A4TGP0|MTLD_YERPP Mannitol-1-phosphate 5-dehydrogenase
           OS=Yersinia pestis (strain Pestoides F) GN=mtlD PE=3
           SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 131 LTSGNSENKQHISAHLSEQKYLLLELHLSFTPSRTKR 21
           +  G S+ KQH+ A LSE + + +E H+ F  S   R
Sbjct: 123 MVRGTSQLKQHVFAALSEDEQIWVEQHVGFVDSAVDR 159


>sp|Q1CD89|MTLD_YERPN Mannitol-1-phosphate 5-dehydrogenase
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mtlD
           PE=3 SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 131 LTSGNSENKQHISAHLSEQKYLLLELHLSFTPSRTKR 21
           +  G S+ KQH+ A LSE + + +E H+ F  S   R
Sbjct: 123 MVRGTSQLKQHVFAALSEDEQIWVEQHVGFVDSAVDR 159


>sp|Q8Z9X0|MTLD_YERPE Mannitol-1-phosphate 5-dehydrogenase
           OS=Yersinia pestis GN=mtlD PE=3 SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 131 LTSGNSENKQHISAHLSEQKYLLLELHLSFTPSRTKR 21
           +  G S+ KQH+ A LSE + + +E H+ F  S   R
Sbjct: 123 MVRGTSQLKQHVFAALSEDEQIWVEQHVGFVDSAVDR 159


>sp|Q1C3J5|MTLD_YERPA Mannitol-1-phosphate 5-dehydrogenase
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mtlD
           PE=3 SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 131 LTSGNSENKQHISAHLSEQKYLLLELHLSFTPSRTKR 21
           +  G S+ KQH+ A LSE + + +E H+ F  S   R
Sbjct: 123 MVRGTSQLKQHVFAALSEDEQIWVEQHVGFVDSAVDR 159


>sp|A7FP92|MTLD_YERP3 Mannitol-1-phosphate 5-dehydrogenase
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=mtlD PE=3 SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 131 LTSGNSENKQHISAHLSEQKYLLLELHLSFTPSRTKR 21
           +  G S+ KQH+ A LSE + + +E H+ F  S   R
Sbjct: 123 MVRGTSQLKQHVFAALSEDEQIWVEQHVGFVDSAVDR 159
tr_hit_id A9GB99
Definition tr|A9GB99|A9GB99_SORC5 Putative Nucleoside-triphosphatase OS=Sorangium cellulosum (strain So ce56)
Align length 64
Score (bit) 34.3
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943807|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A07, 5'
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9GB99|A9GB99_SORC5 Putative Nucleoside-triphosphatase OS=Sor...    34   4.5  
tr|A8KC49|A8KC49_DANRE LOC100149217 protein (Fragment) OS=Danio ...    33   7.7  
tr|B1JLS4|B1JLS4_YERPY Type I site-specific deoxyribonuclease, H...    33   7.7  
tr|B1JLR6|B1JLR6_YERPY Type I site-specific deoxyribonuclease OS...    33   7.7  

>tr|A9GB99|A9GB99_SORC5 Putative Nucleoside-triphosphatase
           OS=Sorangium cellulosum (strain So ce56) GN=sce2818 PE=4
           SV=1
          Length = 182

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 177 LPMWEFSFRRRSCSQEVLGNSKVSHNKGCIC*VDNGSLLNFTGTILQTIGVHAEGKTHFH 356
           +P WE   + R CS    G S+ +H    +C  D  +L  +TG++   I V   G    H
Sbjct: 83  MPFWE-RLQDRICSLIPPGQSRAAHVVQKVCYCDGRTLRVYTGSVTGEIAVEQRGDEGIH 141

Query: 357 TLPM 368
             PM
Sbjct: 142 WEPM 145


>tr|A8KC49|A8KC49_DANRE LOC100149217 protein (Fragment) OS=Danio
           rerio GN=LOC100149217 PE=2 SV=1
          Length = 418

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 173 HHIESSQKQDSANMLTSGNSENKQHISAHLSEQKYLLLELHLSFTPSRTKRKH 15
           H  E + K D  +     +S+ K+H+  H  E+ Y   E  +SF P    RKH
Sbjct: 61  HSGEKTHKCDQCSKTFLISSDLKKHLRDHTKEKPYSSAEFGISFRPQSNLRKH 113


>tr|B1JLS4|B1JLS4_YERPY Type I site-specific deoxyribonuclease, HsdR
            family OS=Yersinia pseudotuberculosis serotype O:3
            (strain YPIII) GN=YPK_3674 PE=4 SV=1
          Length = 1075

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -3

Query: 164  ESSQKQDSANMLTSGNSENKQHISAHLSEQKYLLLELH 51
            E +Q QDSAN+ T+ N  +K   S   SEQKY  L LH
Sbjct: 909  ELNQHQDSANIETTLNELHKSFASLTQSEQKYAKLFLH 946


>tr|B1JLR6|B1JLR6_YERPY Type I site-specific deoxyribonuclease
           OS=Yersinia pseudotuberculosis serotype O:3 (strain
           YPIII) GN=YPK_3666 PE=4 SV=1
          Length = 881

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -3

Query: 164 ESSQKQDSANMLTSGNSENKQHISAHLSEQKYLLLELH 51
           E +Q QDSAN+ T+ N  +K   S   SEQKY  L LH
Sbjct: 715 ELNQHQDSANIETTLNELHKSFASLTQSEQKYAKLFLH 752