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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943813
Clone id YMU02A01NGRL0004_A14
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_A14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACGGAGGGGCAAAATGGTGAGGCAGCATTGTCTGAGTGCAGTGGTGGTGCTGGCGTTTCT
GGTACCGCTCGTAGCAGCGCGTGCAGTAGGCCGCCTCTGCGACACCTCCTCCTTCTTTCC
AGACCCCAACAATGATCGCACTGTGACGTTCCTTGGCGCTAATGCAGGCTCCGCAGGTTT
CAAGCTCTTCTCTTTTGCCAGCAATGGCTTCCTCGGGGCTCCTGCCAATCTTGTCGAGGT
AAGACTCCTTAACCTGCACAGGAAAATGCTCTTCAACCCCACCCTTTCACACTCCCTGGA
TCTGCGCATCAAGCCAGATAAACCCTTTGTTGATGCTCCTGCCCGAAATCAAGTGGTCCA
GACATGGAGCTTCTCCACCAGCAACCCCCAGCATCCCATCATATGGATCAATATCCGCTC
TCGCCGTGCCCTTTGGCGCCCTGATCTTGCGGTTCCTCATGTTGAGCAGAAGCCCCTGAG
TTTGGATTACGGTACCAATCTGTCGGTATTTGTGATTTCAGTTGTCTTGGGTTTTGTTTG
CTTCTGGGCTGCGGCAGCGTT
■■Homology search results ■■ -
sp_hit_id P16467
Definition sp|P16467|PDC5_YEAST Pyruvate decarboxylase isozyme 2 OS=Saccharomyces cerevisiae
Align length 65
Score (bit) 33.5
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943813|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A14, 5'
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16467|PDC5_YEAST Pyruvate decarboxylase isozyme 2 OS=Sacchar...    33   0.73 
sp|P34734|PDC_HANUV Pyruvate decarboxylase OS=Hanseniaspora uvar...    33   1.2  
sp|P06169|PDC1_YEAST Pyruvate decarboxylase isozyme 1 OS=Sacchar...    32   1.6  
sp|A6L1V8|LEUC_BACV8 3-isopropylmalate dehydratase large subunit...    31   3.6  
sp|Q24143|HR96_DROME Nuclear hormone receptor HR96 OS=Drosophila...    31   3.7  
sp|Q8MII8|LRC25_BOVIN Leucine-rich repeat-containing protein 25 ...    30   6.3  
sp|Q9ET78|JPH2_MOUSE Junctophilin-2 OS=Mus musculus GN=Jph2 PE=1...    30   6.3  
sp|P33149|PDC1_KLUMA Pyruvate decarboxylase OS=Kluyveromyces mar...    30   8.1  
sp|Q5U2X4|DPEP3_RAT Dipeptidase 3 OS=Rattus norvegicus GN=Dpep3 ...    30   8.1  
sp|Q6C8A3|DNLI4_YARLI DNA ligase 4 OS=Yarrowia lipolytica GN=LIG...    30   8.1  
sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium di...    30   8.2  
sp|Q13574|DGKZ_HUMAN Diacylglycerol kinase zeta OS=Homo sapiens ...    30   8.2  

>sp|P16467|PDC5_YEAST Pyruvate decarboxylase isozyme 2
           OS=Saccharomyces cerevisiae GN=PDC5 PE=1 SV=4
          Length = 563

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = +2

Query: 209 FLGAPANLVEVRLLNLHRKMLFNPTLSHSLDLRIKPDKPFVDAPARNQVVQTWSFSTSNP 388
           +LG PANLV+   LN+  K+L  P     +DL +KP+    DA A  +VV+T      + 
Sbjct: 164 YLGLPANLVD---LNVPAKLLETP-----IDLSLKPN----DAEAEAEVVRTVVELIKDA 211

Query: 389 QHPII 403
           ++P+I
Sbjct: 212 KNPVI 216


>sp|P34734|PDC_HANUV Pyruvate decarboxylase OS=Hanseniaspora uvarum
           GN=PDC PE=3 SV=1
          Length = 564

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = +2

Query: 209 FLGAPANLVEVRLLNLHRKMLFNPTLSHSLDLRIKPDKPFVDAPARNQVVQTWSFSTSNP 388
           +LG PANLV+   LN+  K+L        +DL +K +    DA A N+VV+T     ++ 
Sbjct: 164 YLGLPANLVD---LNVPAKLL-----ETKIDLALKAN----DAEAENEVVETILALVADA 211

Query: 389 QHPII 403
           ++P+I
Sbjct: 212 KNPVI 216


>sp|P06169|PDC1_YEAST Pyruvate decarboxylase isozyme 1
           OS=Saccharomyces cerevisiae GN=PDC1 PE=1 SV=7
          Length = 563

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = +2

Query: 209 FLGAPANLVEVRLLNLHRKMLFNPTLSHSLDLRIKPDKPFVDAPARNQVVQTWSFSTSNP 388
           +LG PANLV+   LN+  K+L  P     +D+ +KP+    DA +  +V+ T      + 
Sbjct: 164 YLGLPANLVD---LNVPAKLLQTP-----IDMSLKPN----DAESEKEVIDTILALVKDA 211

Query: 389 QHPII 403
           ++P+I
Sbjct: 212 KNPVI 216


>sp|A6L1V8|LEUC_BACV8 3-isopropylmalate dehydratase large subunit
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=leuC PE=3 SV=1
          Length = 460

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -3

Query: 280 GVEEHFPVQVKESY----LDKIGRSPEEAIAGKREELETCGACISAK 152
           G+ EH PV  K +     LD +G  P E++ GK+ +    GAC + +
Sbjct: 299 GITEHIPVDDKSASFKKSLDYMGFQPGESLLGKKIDYVFLGACTNGR 345


>sp|Q24143|HR96_DROME Nuclear hormone receptor HR96 OS=Drosophila
           melanogaster GN=Hr96 PE=1 SV=1
          Length = 723

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -1

Query: 219 APRKPLLAKEKSLKPAEPALAPRNVTVRSLLGS 121
           A RKPLL KE ++KPA PA    +  ++S+LG+
Sbjct: 315 ADRKPLLDKEPAVKPAAPA-ERADTVIQSMLGN 346


>sp|Q8MII8|LRC25_BOVIN Leucine-rich repeat-containing protein 25
           OS=Bos taurus GN=LRRC25 PE=2 SV=1
          Length = 307

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = +1

Query: 154 WR*CRLRRFQALLFCQQWLPRGSCQSCRGKTP*PAQENALQPHPFTLPGSAHQAR*TLC* 333
           WR CR R  Q L   + W  +   +S  G+ P  + +      P   P            
Sbjct: 191 WRFCRHRMDQNL--SKTWASQDGSRSGSGRQPRYSSQGRRPKSPANTP------------ 236

Query: 334 CSCPKSSGPDMELLHQQPPASHH 402
              P+SS PD E +   PPA+ H
Sbjct: 237 ---PRSSTPDYENVFVGPPAARH 256


>sp|Q9ET78|JPH2_MOUSE Junctophilin-2 OS=Mus musculus GN=Jph2 PE=1
           SV=2
          Length = 696

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = -1

Query: 219 APRKPLLAKEKSLKP------AEPALAPRNVTVRSLLGSGKKEEVSQRRPTARAATSGTR 58
           APR P+ AK+ +L+P      AEP    R    R L  +G K++  +    A+ A     
Sbjct: 610 APRSPVPAKQATLEPKPIVPKAEPKAKARKTEARGLSKAGAKKKGRKEVAQAKEAEVEVE 669

Query: 57  NASTTTALRQCCLTIL 10
               T  +   C+ IL
Sbjct: 670 EVPNTVLI---CMVIL 682


>sp|P33149|PDC1_KLUMA Pyruvate decarboxylase OS=Kluyveromyces
           marxianus GN=PDC1 PE=3 SV=1
          Length = 564

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +2

Query: 209 FLGAPANLVEVRLLNLHRKMLFNPTLSHSLDLRIKPDKPFVDAPARNQVVQTWSFSTSNP 388
           +LG PANLV+   L +   +L  P     +DL +KP+ P     A N+V++T      + 
Sbjct: 164 YLGLPANLVD---LKVPASLLETP-----IDLSLKPNDP----EAENEVLETVLELIKDA 211

Query: 389 QHPII 403
           ++P+I
Sbjct: 212 KNPVI 216


>sp|Q5U2X4|DPEP3_RAT Dipeptidase 3 OS=Rattus norvegicus GN=Dpep3
           PE=2 SV=1
          Length = 488

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 316 WLDAQIQGV*KGGVEEHFPVQVKESYLDKIGRSPEEAIAGKREELETC 173
           W + ++QGV +G +   F  QV++     +G+SP E +  +R++  TC
Sbjct: 385 WGEQELQGVLRGNLLRVFR-QVEQVREKSLGQSPVEVVFPERQQSSTC 431


>sp|Q6C8A3|DNLI4_YARLI DNA ligase 4 OS=Yarrowia lipolytica GN=LIG4
           PE=3 SV=1
          Length = 956

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 157 AKERHSAIIVGVWKEGGGVAEAAYCTRCYERYQKR 53
           AK+   A  +  WK+GG  +   +  RCYE   KR
Sbjct: 133 AKDSPDAKALSEWKQGGNESAGNFSKRCYEVLSKR 167
tr_hit_id Q5AYC2
Definition tr|Q5AYC2|Q5AYC2_EMENI Putative uncharacterized protein OS=Emericella nidulans
Align length 60
Score (bit) 38.1
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943813|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A14, 5'
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5AYC2|Q5AYC2_EMENI Putative uncharacterized protein OS=Emeri...    38   0.33 
tr|A1DCR1|A1DCR1_NEOFI Dihydrolipoamide acetyltransferase compon...    38   0.33 
tr|Q2USG5|Q2USG5_ASPOR Dihydrolipoamide acetyltransferase OS=Asp...    37   0.57 
tr|B8MX81|B8MX81_ASPFL Pyruvate dehydrogenase complex, dihydroli...    37   0.57 
tr|B6VUD2|B6VUD2_9BACE Putative uncharacterized protein OS=Bacte...    35   3.6  
tr|B3P624|B3P624_DROER GG11545 OS=Drosophila erecta GN=GG11545 P...    35   3.7  
tr|Q2GY41|Q2GY41_CHAGB Putative uncharacterized protein OS=Chaet...    35   3.7  
tr|A4KBN9|A4KBN9_PICV Capsid protein OS=Pigeon circovirus GN=Cap...    34   4.7  
tr|B4KKD6|B4KKD6_DROMO GI17798 OS=Drosophila mojavensis GN=GI177...    34   4.7  
tr|A2R4K6|A2R4K6_ASPNC Similarity to hypothetical protein SPBC12...    34   4.7  
tr|Q6ZPI9|Q6ZPI9_MOUSE MKIAA1740 protein (Fragment) OS=Mus muscu...    34   6.2  
tr|Q73ZA3|Q73ZA3_MYCPA Putative uncharacterized protein OS=Mycob...    34   6.2  
tr|A0QG68|A0QG68_MYCA1 Beta-lactamase OS=Mycobacterium avium (st...    34   6.2  
tr|A6NZC2|A6NZC2_9BACE Putative uncharacterized protein OS=Bacte...    33   8.1  
tr|Q59MM9|Q59MM9_CANAL Putative uncharacterized protein OS=Candi...    33   8.1  
tr|B3LT95|B3LT95_YEAS1 Pyruvate decarboxylase OS=Saccharomyces c...    33   8.1  
tr|A7A133|A7A133_YEAS7 Pyruvate decarboxylase OS=Saccharomyces c...    33   8.1  
tr|Q2GS09|Q2GS09_CHAGB Putative uncharacterized protein OS=Chaet...    33   8.2  

>tr|Q5AYC2|Q5AYC2_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN6708.2 PE=3 SV=1
          Length = 488

 Score = 38.1 bits (87), Expect = 0.33
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
 Frame = -1

Query: 225 AGAPRKPLLAKEKSLKPAEPALA-PRNVTVRSLLGSGK-----KEEVSQRRPTARAATSG 64
           +G   +P L +E ++ PA  ALA  + V +++L G+G+     KE+V + +PTA AA +G
Sbjct: 192 SGEKLQPSLDREPAISPAAKALALEKGVPIKALKGTGRGGQITKEDVEKYKPTAAAAAAG 251


>tr|A1DCR1|A1DCR1_NEOFI Dihydrolipoamide acetyltransferase component
           of pyruvate dehydrogenase OS=Neosartorya fischeri
           (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=NFIA_026950
           PE=3 SV=1
          Length = 484

 Score = 38.1 bits (87), Expect = 0.33
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
 Frame = -1

Query: 210 KPLLAKEKSLKPAEPALA-PRNVTVRSLLGSGK-----KEEVSQRRPTARAATSGTRNAS 49
           +P L +E ++ PA  ALA  + V +++L G+G+     KE+V + +P+  AAT+ T    
Sbjct: 194 QPSLDREPNISPAAKALALEKGVPIKALKGTGRGGQITKEDVEKYKPSVSAATAPTYEDI 253

Query: 48  TTTALRQCCLTIL 10
             T++R+   T L
Sbjct: 254 PLTSMRKTIATRL 266


>tr|Q2USG5|Q2USG5_ASPOR Dihydrolipoamide acetyltransferase
           OS=Aspergillus oryzae GN=AO090005000436 PE=3 SV=1
          Length = 459

 Score = 37.4 bits (85), Expect = 0.57
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
 Frame = -1

Query: 225 AGAPRKPLLAKEKSLKPAEPALA-PRNVTVRSLLGSGK-----KEEVSQRRPTARAATSG 64
           +G   +P L +E ++ PA  ALA  + V +++L G+G+     KE+V + +P+A AA   
Sbjct: 164 SGEKLQPSLDREPTISPAAKALALEKGVPIKALKGTGRGGQITKEDVEKYKPSASAAAGP 223

Query: 63  TRNASTTTALRQ 28
           T      T++R+
Sbjct: 224 TYEDIPLTSMRK 235


>tr|B8MX81|B8MX81_ASPFL Pyruvate dehydrogenase complex,
           dihydrolipoamide acetyltransferase OS=Aspergillus flavus
           NRRL3357 GN=AFLA_076680 PE=4 SV=1
          Length = 485

 Score = 37.4 bits (85), Expect = 0.57
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
 Frame = -1

Query: 225 AGAPRKPLLAKEKSLKPAEPALA-PRNVTVRSLLGSGK-----KEEVSQRRPTARAATSG 64
           +G   +P L +E ++ PA  ALA  + V +++L G+G+     KE+V + +P+A AA   
Sbjct: 190 SGEKLQPSLDREPTISPAAKALALEKGVPIKALKGTGRGGQITKEDVEKYKPSASAAAGP 249

Query: 63  TRNASTTTALRQ 28
           T      T++R+
Sbjct: 250 TYEDIPLTSMRK 261


>tr|B6VUD2|B6VUD2_9BACE Putative uncharacterized protein
           OS=Bacteroides dorei DSM 17855 GN=BACDOR_00905 PE=4 SV=1
          Length = 319

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = -3

Query: 265 FPVQVKESYLDKIGRSPEEAIA------GKREELETCGACISAKERHSAIIVGVWKEGGG 104
           FP+ V +   D I + PE  +        K +E+++CG    +   +S  ++G+WKE   
Sbjct: 96  FPMPVVDLLFDSIEKLPESVVCISPATYFKNDEIQSCGRPRHSFLTYSLFLMGLWKEQKI 155

Query: 103 VAEAAYCTRCYERY 62
            ++  Y T  ++ Y
Sbjct: 156 KSKYTYQTGVFQTY 169


>tr|B3P624|B3P624_DROER GG11545 OS=Drosophila erecta GN=GG11545 PE=4
           SV=1
          Length = 569

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 222 GAPRKPLLAKEKSLKPAEPALAPRNVTVRSLLGSGKKEEV----SQRRPTARAATSGTRN 55
           G+P    LA+ KS K  +P L  RNV V    G G +  +    S   P  +AATS T  
Sbjct: 396 GSPTNQYLARVKSPKAKQPTLKVRNVRVE---GEGLEASIGVPPSTATPKPKAATSTTTP 452

Query: 54  ASTTT 40
             TTT
Sbjct: 453 KPTTT 457


>tr|Q2GY41|Q2GY41_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_07113 PE=4 SV=1
          Length = 381

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = -1

Query: 222 GAPRKPLLAKEKSLKPAEPALAPRNVTVRSLLGSGKKEEVSQRRPTARAATSGTRNASTT 43
           G     LLA+ ++ K AE     +    RSL G GKK+E +Q  PT++   + TR  +T+
Sbjct: 33  GQSESELLARREASKAAEGD--EKKKKKRSLFGFGKKKEPAQPAPTSKPTPATTRTTATS 90


>tr|A4KBN9|A4KBN9_PICV Capsid protein OS=Pigeon circovirus GN=Cap
           PE=4 SV=1
          Length = 273

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +2

Query: 302 LRIKPDKPFVDAPARNQVVQTWSFSTSNPQHPIIWINIRSRRALWRPD------LAVPHV 463
           +R KP     D    NQV  TW  +T N      WI ++     W P       LA  ++
Sbjct: 153 IRPKPQITLTDLSTANQVASTWFTNTRNQ-----WIPLQIATGQWAPQKVNFYGLAFSYL 207

Query: 464 EQKPLSLDYGTNLSVFV 514
           + +P S+ Y   ++ ++
Sbjct: 208 QPQPESMYYEAEITYYI 224


>tr|B4KKD6|B4KKD6_DROMO GI17798 OS=Drosophila mojavensis GN=GI17798
           PE=4 SV=1
          Length = 996

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
 Frame = -3

Query: 205 IAGKREELETCGACISAKERHSAIIVGVWK-----EGGGVAEAAYCTRCYERYQKRQHHH 41
           I G  E +   G+C   ++RH+A      +          A AA  T C+       HHH
Sbjct: 410 IYGGHEHIHGRGSCCQRRKRHNATQTSAQRCCCAAAAAAAAVAASATVCHCHVTTTHHHH 469

Query: 40  CTQTMLPHHF 11
           C      HH+
Sbjct: 470 CHHHCHHHHY 479


>tr|A2R4K6|A2R4K6_ASPNC Similarity to hypothetical protein
           SPBC1271.03c - Schizosaccharomyces pombe OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=An15g00740
           PE=4 SV=1
          Length = 563

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 279 PPFHTPWICASSQINPLLMLLPEIKWSRHGASPPATPSIPSYGSI-SALAVPFG 437
           PP +TP + ASS ++    + P    S   + PP +PS PS  S     A+P G
Sbjct: 463 PPTYTPGVVASSTVDETNTVTPRTDLSSSNSFPPHSPSSPSSDSTPGGTAIPTG 516