DK943821
Clone id YMU02A01NGRL0004_A24
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_A24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GTTATCGCAGATGGATGAATGATAGATTGCTAAGAGAGCTTGCTCCTCCATTGGATGCAC
AAGAAATTGGGAGCCTGTTCGCTCCTCCTCCTTGGGGGGAAAAGAGTCTTGCAAGTCCGT
TTGAAAGAGTGTCTGCTTATGGAGAGAGTTGGGCTCAGGAGAAGGCAGCTTGGGAACCAT
TTAGAAACAATGTTGACATGGATATGGAGGCAAGGGTATTAAAACATGTAGCAACACATC
AAGGCAAGACACTTAGCCATGATGCTCGAAGGCACAAAGCTGCAGCAAAAGCATGGCAAG
GTGTTAGCCACAGATCTAGGGATGTCCTCCGTCGCAGCTCTTCATGGCATCTTGTCAACA
TATTTGAGGAAAAGATACGTAAAATACCTCAAGAAGTGAAAATGGGTGGATCAAACTGCC
TTGTTTTTAAATGTG
■■Homology search results ■■ -
sp_hit_id Q9NRB3
Definition sp|Q9NRB3|CHSTC_HUMAN Carbohydrate sulfotransferase 12 OS=Homo sapiens
Align length 47
Score (bit) 30.4
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943821|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A24, 5'
(435 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9NRB3|CHSTC_HUMAN Carbohydrate sulfotransferase 12 OS=Homo s... 30 3.4
sp|A9IK36|RIMM_BORPD Ribosome maturation factor rimM OS=Bordetel... 30 5.6
sp|Q8IZ08|GP135_HUMAN Probable G-protein coupled receptor 135 OS... 29 7.3
sp|Q8MQJ9|BRAT_DROME Brain tumor protein OS=Drosophila melanogas... 29 7.3
sp|Q9DXE7|REN_TYLCC Replication enhancer protein OS=Tomato yello... 29 9.6
sp|P94461|PRIA_BACSU Primosomal protein N' OS=Bacillus subtilis ... 29 9.6
sp|Q8L6Y7|PP193_ARATH Pentatricopeptide repeat-containing protei... 29 9.6
sp|A9KMC2|NUSB_CLOPH N utilization substance protein B homolog O... 29 9.8

>sp|Q9NRB3|CHSTC_HUMAN Carbohydrate sulfotransferase 12 OS=Homo
sapiens GN=CHST12 PE=1 SV=2
Length = 414

Score = 30.4 bits (67), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1

Query: 204 YPCQHCF*MVPKLPSPEPNSLHKQTLFQTDLQDSFPPKEEERTGSQF 64
+PCQ + V KL + + ++ L Q D Q FPP RT S +
Sbjct: 330 HPCQIDYDFVGKLETLDEDAAQLLQLLQVDRQLRFPPSYRNRTASSW 376


>sp|A9IK36|RIMM_BORPD Ribosome maturation factor rimM OS=Bordetella
petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
GN=rimM PE=3 SV=1
Length = 206

Score = 29.6 bits (65), Expect = 5.6
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3

Query: 321 DVLRRSSSWHLVNIFEEKIRKI----PQEVKM 404
DVLR++SSW L + EK R + PQE K+
Sbjct: 39 DVLRKASSWWLTRLVPEKARGVVASAPQEYKV 70


>sp|Q8IZ08|GP135_HUMAN Probable G-protein coupled receptor 135
OS=Homo sapiens GN=GPR135 PE=2 SV=2
Length = 494

Score = 29.3 bits (64), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2

Query: 185 SKWFPSCLLLSPTLSISRHSFKRTCKTLFPPRRR 84
S++F SC + TLS++ S R C + PPR +
Sbjct: 187 SRFFSSCFGIVSTLSVALISLDRYCAIVRPPREK 220


>sp|Q8MQJ9|BRAT_DROME Brain tumor protein OS=Drosophila melanogaster
GN=brat PE=1 SV=2
Length = 1037

Score = 29.3 bits (64), Expect = 7.3
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Frame = +2

Query: 38 ACSSIGCTRNWEPVRSSSLGGKESCKSV*KSVCLWRELGS--GEGSLGTI*KQC*HGYGG 211
+CSS + + SSS G C S SV + S G G +G+ + +G G
Sbjct: 87 SCSSSSSSSSSSSSSSSSTSGLSGCGSTSSSVISANNVASSNGPGVIGSNLQSSNNG-GN 145

Query: 212 KGI----------------KTCSNTSRQDT*P*CSKAQS-CSKSMARC 304
GI + SNTS + P C+ +S CS ++A+C
Sbjct: 146 SGISSLVVGAGKGSNSSSNSSSSNTSANGSPPRCTACKSKCSDAVAKC 193


>sp|Q9DXE7|REN_TYLCC Replication enhancer protein OS=Tomato yellow
leaf curl China virus GN=C3 PE=3 SV=1
Length = 134

Score = 28.9 bits (63), Expect = 9.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2

Query: 398 HFLRYFTYLFLKYVDKM 348
HFLR F Y F+KY+D++
Sbjct: 81 HFLRVFKYQFIKYLDRL 97


>sp|P94461|PRIA_BACSU Primosomal protein N' OS=Bacillus subtilis
GN=priA PE=3 SV=2
Length = 805

Score = 28.9 bits (63), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3

Query: 156 QEKAAWEPFRNNVDMDMEARVLKHVATHQGKT 251
+++AA+EP R +D D L H T GKT
Sbjct: 271 EQRAAFEPIRETLDSDEHKVFLLHGVTGSGKT 302


>sp|Q8L6Y7|PP193_ARATH Pentatricopeptide repeat-containing protein
At2g38420, mitochondrial OS=Arabidopsis thaliana
GN=At2g38420 PE=2 SV=2
Length = 453

Score = 28.9 bits (63), Expect = 9.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3

Query: 327 LRRSSSWHLVNIFEEKIRKIP 389
+ RSSSWH ++ F K RKIP
Sbjct: 1 MARSSSWHRMSNFMRKYRKIP 21


>sp|A9KMC2|NUSB_CLOPH N utilization substance protein B homolog
OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
18823 / ISDg) GN=nusB PE=3 SV=1
Length = 132

Score = 28.9 bits (63), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1

Query: 195 QHCF*MVPKLPSPEPNSLHKQTLFQTDLQDSFPPKEEERTGSQF 64
+H F M+ + EP L +Q LF D +S P+++E +F
Sbjct: 8 EHLFRMLFRKEFHEPTELEEQVLFYFDSLESITPEQQEYLNVRF 51


tr_hit_id A9ST65
Definition tr|A9ST65|A9ST65_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 125
Score (bit) 107.0
E-value 3.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943821|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A24, 5'
(435 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9ST65|A9ST65_PHYPA Predicted protein OS=Physcomitrella paten... 107 3e-22
tr|B4FAC6|B4FAC6_MAIZE Putative uncharacterized protein OS=Zea m... 87 5e-16
tr|A9PI03|A9PI03_POPTR Putative uncharacterized protein OS=Popul... 86 7e-16
tr|Q2RAL5|Q2RAL5_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 86 1e-15
tr|A2ZBE7|A2ZBE7_ORYSI Putative uncharacterized protein OS=Oryza... 86 1e-15
tr|Q2QXS9|Q2QXS9_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 85 2e-15
tr|B8BM11|B8BM11_ORYSI Putative uncharacterized protein OS=Oryza... 85 2e-15
tr|B4FWI8|B4FWI8_MAIZE Putative uncharacterized protein OS=Zea m... 83 6e-15
tr|Q9ZVS6|Q9ZVS6_ARATH F15K9.15 protein OS=Arabidopsis thaliana ... 82 2e-14
tr|Q8L3X7|Q8L3X7_ARATH Putative uncharacterized protein (At1g032... 82 2e-14
tr|A5BM09|A5BM09_VITVI Putative uncharacterized protein OS=Vitis... 79 1e-13
tr|A7PU84|A7PU84_VITVI Chromosome chr7 scaffold_31, whole genome... 78 2e-13
tr|Q0IQ56|Q0IQ56_ORYSJ Os12g0144000 protein OS=Oryza sativa subs... 75 2e-12
tr|A8HMH0|A8HMH0_CHLRE Predicted protein (Fragment) OS=Chlamydom... 62 1e-08
tr|A4HPZ5|A4HPZ5_LEIBR Putative uncharacterized protein OS=Leish... 35 2.4
tr|A3Z5R0|A3Z5R0_9SYNE Heat shock protein DnaJ-like OS=Synechoco... 34 3.2
tr|B2W5Z2|B2W5Z2_PYRTR Ochratoxin A non-ribosomal peptide synthe... 33 7.1
tr|Q0D1Z7|Q0D1Z7_ASPTN Putative uncharacterized protein OS=Asper... 33 7.1
tr|A7H7C5|A7H7C5_ANADF DEAD/H associated domain protein OS=Anaer... 33 9.2

>tr|A9ST65|A9ST65_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_234083 PE=4 SV=1
Length = 269

Score = 107 bits (267), Expect = 3e-22
Identities = 56/125 (44%), Positives = 71/125 (56%)
Frame = +3

Query: 3 YRRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPF 182
YRRW ND +LRELAP L A EIG+LFAPPPWG+KS+ SP E V +++ A WEPF
Sbjct: 66 YRRWANDNMLRELAPTLTASEIGNLFAPPPWGDKSVQSPLETVMVS----SRDMAIWEPF 121

Query: 183 RNNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNI 362
RNNVDMD++A+VL + W GV R LRR+ + +
Sbjct: 122 RNNVDMDLQAKVLHQGVPRKAVGELGMERRQSPAMKAWSGVERNMRAALRRNYASAFLMD 181

Query: 363 FEEKI 377
EEK+
Sbjct: 182 LEEKL 186


>tr|B4FAC6|B4FAC6_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 243

Score = 86.7 bits (213), Expect = 5e-16
Identities = 46/125 (36%), Positives = 69/125 (55%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDRLL EL P L +EI LFAPPPWGE+ S F R S + WE FR
Sbjct: 53 RRWLNDRLLIELVPRLHVEEIKGLFAPPPWGEELPLSAFCRTSV---------SDWEAFR 103

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
++DMD EAR+++H+ K + W+ + ++R+ +++ L+ I+
Sbjct: 104 -SIDMDAEARLMQHMKRSSEKQRTHVDEDELIALNAWRRIGRQTREAIKKKFLPDLLQIY 162

Query: 366 EEKIR 380
EE++R
Sbjct: 163 EEQVR 167


>tr|A9PI03|A9PI03_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 244

Score = 86.3 bits (212), Expect = 7e-16
Identities = 54/139 (38%), Positives = 70/139 (50%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDRLL EL P LDA+EI LFAPPPWG+ SPF ++ GE W+ FR
Sbjct: 51 RRWLNDRLLMELVPRLDAEEIRGLFAPPPWGDDVPLSPF-CMTNMGE--------WDKFR 101

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
N+DMD +A ++ + K W + R+RD LRRS L+ +
Sbjct: 102 -NIDMDKQANIIDRLNRRSVKREGRVDADKMAVLNAWHRIDCRTRDALRRSFLVELIESY 160

Query: 366 EEKIRKIPQEVKMGGSNCL 422
E IR Q+ GG L
Sbjct: 161 EACIRVFIQD---GGDEVL 176


>tr|Q2RAL5|Q2RAL5_ORYSJ Expressed protein OS=Oryza sativa subsp.
japonica GN=Os11g0147100 PE=2 SV=1
Length = 246

Score = 85.5 bits (210), Expect = 1e-15
Identities = 50/140 (35%), Positives = 76/140 (54%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDRLL EL P L +EI LFAPPPWGE+ S F R S GE W+ FR
Sbjct: 54 RRWLNDRLLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTSV-GE--------WDAFR 104

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
++DMD+EAR+++ + K + W + ++R+ ++R+ L+ I+
Sbjct: 105 -SIDMDVEARLVQQMKQSSTKQKNHLDRDELVALNSWHHIDRQTREAIKRNFLPDLLEIY 163

Query: 366 EEKIRKIPQEVKMGGSNCLV 425
EE++R ++ G + LV
Sbjct: 164 EERVRTFIEDT--SGKDMLV 181


>tr|A2ZBE7|A2ZBE7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_35098 PE=4 SV=1
Length = 246

Score = 85.5 bits (210), Expect = 1e-15
Identities = 50/140 (35%), Positives = 76/140 (54%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDRLL EL P L +EI LFAPPPWGE+ S F R S GE W+ FR
Sbjct: 54 RRWLNDRLLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTSV-GE--------WDAFR 104

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
++DMD+EAR+++ + K + W + ++R+ ++R+ L+ I+
Sbjct: 105 -SIDMDVEARLVQQMKQSSTKQKNHLDRDELVALNSWHHIDRQTREAIKRNFLPDLLEIY 163

Query: 366 EEKIRKIPQEVKMGGSNCLV 425
EE++R ++ G + LV
Sbjct: 164 EERVRTFIEDT--SGKDMLV 181


>tr|Q2QXS9|Q2QXS9_ORYSJ Expressed protein OS=Oryza sativa subsp.
japonica GN=LOC_Os12g05000 PE=4 SV=1
Length = 245

Score = 84.7 bits (208), Expect = 2e-15
Identities = 48/140 (34%), Positives = 75/140 (53%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDRLL EL P L +EI LFAPPPWGE+ S F R S W+ FR
Sbjct: 52 RRWLNDRLLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTS---------DGEWDAFR 102

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
++DMD+EAR+++ + K + W + ++R+ ++R+ L++I+
Sbjct: 103 -SIDMDVEARLMQQMKQSSTKQKNHVDSDELIALNAWHRIDRQTREAIKRNFLPDLLDIY 161

Query: 366 EEKIRKIPQEVKMGGSNCLV 425
E++IR ++ G + LV
Sbjct: 162 EDRIRAFIEDA--SGKDVLV 179


>tr|B8BM11|B8BM11_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_37445 PE=4 SV=1
Length = 245

Score = 84.7 bits (208), Expect = 2e-15
Identities = 48/140 (34%), Positives = 75/140 (53%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDRLL EL P L +EI LFAPPPWGE+ S F R S W+ FR
Sbjct: 52 RRWLNDRLLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTS---------DGEWDAFR 102

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
++DMD+EAR+++ + K + W + ++R+ ++R+ L++I+
Sbjct: 103 -SIDMDVEARLMQQMKQSSTKQKNHVDSDELIALNAWHRIDRQTREAIKRNFLPDLLDIY 161

Query: 366 EEKIRKIPQEVKMGGSNCLV 425
E++IR ++ G + LV
Sbjct: 162 EDRIRAFIEDA--SGKDVLV 179


>tr|B4FWI8|B4FWI8_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 247

Score = 83.2 bits (204), Expect = 6e-15
Identities = 46/125 (36%), Positives = 68/125 (54%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
R+W NDRLL EL P L +EI LFAPPPWGE+ S F R + GE W+ FR
Sbjct: 53 RKWFNDRLLIELVPRLYVEEIKGLFAPPPWGEQVPLSAFYRANV-GE--------WDSFR 103

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
++DMD EAR+++H+ K + W + +R+ ++R+ L+ I+
Sbjct: 104 -SIDMDAEARLMQHMKKSLEKPRNHVDEGESIALNAWHRIDRHTREAIKRNFLPDLLGIY 162

Query: 366 EEKIR 380
EE++R
Sbjct: 163 EERVR 167


>tr|Q9ZVS6|Q9ZVS6_ARATH F15K9.15 protein OS=Arabidopsis thaliana
GN=F15K9.15 PE=4 SV=1
Length = 256

Score = 81.6 bits (200), Expect = 2e-14
Identities = 49/130 (37%), Positives = 66/130 (50%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDR+L EL P LDAQEI LFAPPPWG+ S F ++ GE W+ FR
Sbjct: 50 RRWLNDRILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFS-LTNVGE--------WDKFR 100

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
N+DMD EA ++ + + W+ + R+RD LRRS L+ +
Sbjct: 101 -NIDMDKEANIMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGY 159

Query: 366 EEKIRKIPQE 395
E I +E
Sbjct: 160 ESCISHFIEE 169


>tr|Q8L3X7|Q8L3X7_ARATH Putative uncharacterized protein
(At1g03250/F15K9_13) OS=Arabidopsis thaliana
GN=At1g03250 PE=2 SV=1
Length = 245

Score = 81.6 bits (200), Expect = 2e-14
Identities = 49/130 (37%), Positives = 66/130 (50%)
Frame = +3

Query: 6 RRWMNDRLLRELAPPLDAQEIGSLFAPPPWGEKSLASPFERVSAYGESWAQEKAAWEPFR 185
RRW+NDR+L EL P LDAQEI LFAPPPWG+ S F ++ GE W+ FR
Sbjct: 50 RRWLNDRILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFS-LTNVGE--------WDKFR 100

Query: 186 NNVDMDMEARVLKHVATHQGKTLSXXXXXXXXXXXXWQGVSHRSRDVLRRSSSWHLVNIF 365
N+DMD EA ++ + + W+ + R+RD LRRS L+ +
Sbjct: 101 -NIDMDKEANIMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGY 159

Query: 366 EEKIRKIPQE 395
E I +E
Sbjct: 160 ESCISHFIEE 169