DK943832 [AcEST]

DK943832
Clone id	YMU02A01NGRL0004_B17
Library	YMU02
Length	495
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_B17. 5' end sequence.
Accession	DK943832
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGGGATAAATAAAGAAAAAAATCTATGGGTAGACGTC TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCCAAAAAAAAAAAAAAA AAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O43114
Definition	sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length	57
Score (bit)	30.0
E-value	5.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK943832\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_B17, 5' (465 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 30 5.2 sp\|A6TBC5\|HIS7_KLEP7 Histidine biosynthesis bifunctional protein... 29 8.9 >sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2 Length = 455 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Frame = +1 Query: 247 LISTSGGINKEKNLWVDVDSLIVTKPQRI--------NLGKKVGINKSGFVKIIE 393 L+ T+ ++KE+N+W+++ D + RI ++ K GIN SGF+ ++E Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107 >sp\|A6TBC5\|HIS7_KLEP7 Histidine biosynthesis bifunctional protein hisB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hisB PE=3 SV=1 Length = 355 Score = 29.3 bits (64), Expect = 8.9 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 8/56 (14%) Frame = +1 Query: 238 ILGLISTSGGINKEKN----LWVD----VDSLIVTKPQRINLGKKVGINKSGFV 381 +L I+T GG E N L++D V D+ L + + ++ LG K GIN+ GFV Sbjct: 204 MLDQIATHGGFRMEVNVGGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFV 259
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	35.0
E-value	1.8
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK943832\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_B17, 5' (465 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.8 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 35.0 bits (79), Expect = 1.8 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = -2 Query: 188 LKMSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39 LK +++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283