BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943841|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_C02, 5'
         (342 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0PYW1|NAGB_CLONN Glucosamine-6-phosphate deaminase OS=Clostr...    34   0.20 
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   1.7  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   3.7  

>sp|A0PYW1|NAGB_CLONN Glucosamine-6-phosphate deaminase
           OS=Clostridium novyi (strain NT) GN=nagB PE=3 SV=1
          Length = 241

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +3

Query: 63  QELGKIVTKQIVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGI- 239
           +E  KIV  Q++  P  +LGL + S  +   KNL V   +  +  +K +  NL +  G+ 
Sbjct: 14  KEASKIVLNQVISKPNSVLGLATGSTPLGMYKNLIVAYQNKNIDFSKIKTFNLDEYYGLS 73

Query: 240 ---NKSGFVKIIEHLF 278
              N+S +  ++E+LF
Sbjct: 74  KHNNQSYYHYMMENLF 89


>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +3

Query: 123 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 269
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 93  IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 257
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943841|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_C02, 5'
         (342 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley...    34   3.2  
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   5.5  

>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
           GN=rpl16 PE=3 SV=1
          Length = 138

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 63  QELGKIVTKQIVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGIN 242
           +E+G+I +KQI    + +         + K+  +W+++  S +I  KPQ + +GK  G  
Sbjct: 38  KEMGRISSKQIEATRKFL------RRNLKKQAKIWINIFPSKMITKKPQEVRMGKGKGYV 91

Query: 243 K--SGFVKIIEHLF 278
           K  + F+K  E LF
Sbjct: 92  KYWAYFIKKNEILF 105


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +3

Query: 39  INLVTHSFQELGKIVTKQIV----LVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKP 206
           INL   S   +G I +   V    +  + I+G ++ SGE+N E   ++   DS   +T  
Sbjct: 716 INLSNGSLYGIGTINSSLSVSDGIVGDKAIIGTLNVSGELNSENGQFIFTLDS---LTNS 772

Query: 207 QRINLGKKVGINKSGFVKIIEHLF 278
             IN+GK   IN S  +  I   F
Sbjct: 773 TFINIGKNATINNSTLIIRINQYF 796