DK943851 [AcEST]

DK943851
Clone id	YMU02A01NGRL0004_C13
Library	YMU02
Length	466
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_C13. 5' end sequence.
Accession	DK943851
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGCAGATTAATCAATCTCGTCACTCATT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA GTAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O43114
Definition	sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length	57
Score (bit)	30.8
E-value	3.1
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK943851\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_C13, 5' (466 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 3.1 sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 6.8 >sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2 Length = 455 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +1 Query: 247 LISTSGEINKEKNLWVDVDSLIVTKPQRI--------NLGKKVGVNKSGFVKIIE 393 L+ T+ +++KE+N+W+++ D + RI ++ K G+N SGF+ ++E Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107 >sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi GN=recB PE=3 SV=1 Length = 1169 Score = 29.6 bits (65), Expect = 6.8 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +1 Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKKVGVNKSGFV 381 IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K +N G + Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	33.1
E-value	7.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK943851\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_C13, 5' (466 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 33 7.0 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 33.1 bits (74), Expect = 7.0 Identities = 15/50 (30%), Positives = 30/50 (60%) Frame = -3 Query: 188 LKMSDEIDSASNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39 LK +++E+D S + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283