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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943880
Clone id YMU02A01NGRL0004_E02
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_E02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTGTGTATAAGCCTTTCGCGCTGGGCCTTCTCTACGCAGGCGCGGTCGATCAACTCTTG
CTCCGACAATGAGGGCTAAGTGGAAGAAGAAAAGAATGCGCAGGTTGAAGAGGAAACGCA
GAAAGATGAGGCAGAGATCCAAGTAGGACTTTTGAAGTTTCTATCGGCGCTGAGGGAGCA
TGTGTGGTCTTCTATCTCAATGGAGAGTTTGAGCTGGATCTCTCTCTTGTGAATAGCGTA
GCAGTGACAAGGGATTGATTGCTTCTCTTATACCCTCCCAAGGACGAAGGCCTGCTCTCC
TTCTGGAATATGATTTTGAGTTGTCTTTCATTTTGCCCTTTTGATGAACGCTCTAAGGCT
AACATGAAAACTGGATTATCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3UQN2
Definition sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
Align length 119
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943880|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_E02, 5'
         (382 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus ...    35   0.15 
sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium ...    32   1.3  
sp|Q555U5|Y4821_DICDI Probable inactive serine/threonine-protein...    31   1.7  
sp|O74689|NDE1_EMENI Nuclear distribution protein nudE OS=Emeric...    31   2.2  
sp|Q96PM9|Z385A_HUMAN Zinc finger protein 385A OS=Homo sapiens G...    30   3.7  
sp|Q5KEK0|PALA_CRYNE pH-response regulator protein palA/RIM20 OS...    29   6.3  

>sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
           GN=Fcho2 PE=1 SV=1
          Length = 809

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = -3

Query: 359 ALERSSKGQNERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTH 180
           A+ R S  Q  R        +S+PSSL   K +N  L    LF     SS++PL   ++ 
Sbjct: 389 AVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSSAPLTSSSSA 448

Query: 179 APSAPIETSKVL----LGSLPHLSAFPLQPAHSFLLPLSPHCRSKS*STAPA*RRPSAK 15
            P+ P+    ++      S P L++  L   +    P SP   S   +T+P    P A+
Sbjct: 449 RPTTPLSLGTLVPPPRPASRPKLASGKLSGINEIPRPFSPPVTS---NTSPPPTAPLAR 504


>sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium
            channel subunit alpha-1B OS=Discopyge ommata PE=2 SV=1
          Length = 2326

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
 Frame = -3

Query: 350  RSSKGQNERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNS---PLR*KTTH 180
            R S+GQ+E    +  + ++RP + G  ++   + +++  +   RSS  S    L  +T  
Sbjct: 2204 RLSRGQSEHNHLLSGESQNRPYAGGDSRQPMGTRISSDPYLGFRSSCGSEDLELLEETLT 2263

Query: 179  APSAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPHC---RSKS*STAPA*RR 27
               A   T+    G  P  S+F  QP  S  +P   HC   RS   STA + R+
Sbjct: 2264 FEVAVAATTAT--GRSPRTSSFTTQPPQSRRVPNGYHCNLGRSTGPSTAASKRK 2315


>sp|Q555U5|Y4821_DICDI Probable inactive serine/threonine-protein
           kinase DDB_G0274821 OS=Dictyostelium discoideum
           GN=DDB_G0274821 PE=3 SV=1
          Length = 854

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 218 SSSNSPLR*KTTHAPSAPIETSKVLLGSLPHLSAFP 111
           SSS  P    ++ +PS+P  TS  LL S+P+ S FP
Sbjct: 626 SSSPPPSSSSSSSSPSSPSSTSPSLLSSIPNPSLFP 661


>sp|O74689|NDE1_EMENI Nuclear distribution protein nudE
           OS=Emericella nidulans GN=nudE PE=1 SV=1
          Length = 586

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -3

Query: 353 ERSSKGQNERQLKIIFQKESRPSSLGGYKRS-NQSLVTATLFTRERSSSNSPLR*KTTHA 177
           ER       R+   + +  S P +   + RS  +S V++ LF+   +  +  L   T   
Sbjct: 189 ERLRNNNRRRRPAPLGRSPSTPHTPEIFDRSPGESTVSSPLFSTPPTKLSLTLASATATP 248

Query: 176 PSAPI-ETSKVLLGSLPHLSAFPLQPA 99
           PS P+ ETS  +  SL   S FPLQ A
Sbjct: 249 PSPPMSETSSSMRKSLTAASGFPLQKA 275


>sp|Q96PM9|Z385A_HUMAN Zinc finger protein 385A OS=Homo sapiens
           GN=ZNF385A PE=1 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 28/99 (28%), Positives = 47/99 (47%)
 Frame = -3

Query: 365 MLALERSSKGQNERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KT 186
           +L+  + S+G  E    + F KE  P SL G    +   V A +     +++ SPL  + 
Sbjct: 276 LLSRHKKSRGAGELAGTLTFSKEL-PKSLAGGLLPSPLAVAAVM----AAAAGSPLSLRP 330

Query: 185 THAPSAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPH 69
             AP+AP+     +   L H +  P++ AH  +L  SP+
Sbjct: 331 --APAAPLLQGPPITHPLLHPAPGPIRTAHGPIL-FSPY 366


>sp|Q5KEK0|PALA_CRYNE pH-response regulator protein palA/RIM20
           OS=Cryptococcus neoformans GN=RIM20 PE=3 SV=1
          Length = 902

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 218 SSSNSPLR*KTTHAPSAPI--ETSKVLLGSLPHLSAFPLQPAHSFLLPLSP 72
           S S+SP+R   + APSAP   E+    L  LPH S+   QPA    LP  P
Sbjct: 785 SFSSSPVR---SPAPSAPARRESPPKTLSFLPHPSSSAWQPASVDFLPPPP 832
tr_hit_id Q6P5W2
Definition tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens
Align length 35
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943880|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_E02, 5'
         (382 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens GN=LOC4...    43   0.007
tr|A0AUP3|A0AUP3_HUMAN LOC339290 protein (Fragment) OS=Homo sapi...    37   0.48 
tr|Q3TPU3|Q3TPU3_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.4  
tr|A8XH87|A8XH87_CAEBR Putative uncharacterized protein OS=Caeno...    35   2.4  
tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis...    34   3.1  
tr|A4HU21|A4HU21_LEIIN Putative uncharacterized protein OS=Leish...    34   3.1  
tr|Q9CIW5|Q9CIW5_LACLA Putative uncharacterized protein ycdJ OS=...    34   4.1  
tr|B1GBH3|B1GBH3_9BURK Putative uncharacterized protein OS=Burkh...    33   7.0  
tr|Q4QHS5|Q4QHS5_LEIMA Putative uncharacterized protein OS=Leish...    33   9.1  

>tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens
           GN=LOC400590 PE=2 SV=1
          Length = 102

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -3

Query: 173 SAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPH 69
           ++ ++ +  LLG LPHLS+F LQPAHS L PL  H
Sbjct: 55  ASTVQQASGLLGPLPHLSSFALQPAHSLLPPLGSH 89


>tr|A0AUP3|A0AUP3_HUMAN LOC339290 protein (Fragment) OS=Homo sapiens
           GN=LOC339290 PE=2 SV=1
          Length = 137

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 17/26 (65%), Positives = 18/26 (69%)
 Frame = -3

Query: 146 LLGSLPHLSAFPLQPAHSFLLPLSPH 69
           LLG LPHLS+F  QPAHS L  L  H
Sbjct: 75  LLGPLPHLSSFAFQPAHSLLSLLGSH 100


>tr|Q3TPU3|Q3TPU3_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Fcho2 PE=1 SV=1
          Length = 538

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = -3

Query: 359 ALERSSKGQNERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTH 180
           A+ R S  Q  R        +S+PSSL   K +N  L    LF     SS++PL   ++ 
Sbjct: 118 AVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSSAPLTSSSSA 177

Query: 179 APSAPIETSKVL----LGSLPHLSAFPLQPAHSFLLPLSPHCRSKS*STAPA*RRPSAK 15
            P+ P+    ++      S P L++  L   +    P SP   S   +T+P    P A+
Sbjct: 178 RPTTPLSLGTLVPPPRPASRPKLASGKLSGINEIPRPFSPPVTS---NTSPPPTAPLAR 233


>tr|A8XH87|A8XH87_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG13181 PE=4 SV=1
          Length = 266

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
 Frame = -3

Query: 335 QNERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRE--RSSSNSPLR*KTTHAPS--A 168
           +NE+Q++I  Q++ +P  L       +  +T + F  +  R  SN+P+  KT+ +PS  +
Sbjct: 42  KNEKQIQISAQQKQKPRPL------MEKTITTSSFKEKSNRQKSNAPVSKKTSSSPSTTS 95

Query: 167 PIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPHCRSKS 54
           P ++   +    P L  +P  P    L+  +P  RS S
Sbjct: 96  PRKSPPAMTPYQPPLQ-YPSSPRDLHLVSSTPSSRSSS 132


>tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=27937 PE=4 SV=1
          Length = 323

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -3

Query: 317 KIIFQKESRP-----SSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETS 153
           +++F + SRP     SS    KR+  +   +   T++   S +P + + T APS P ETS
Sbjct: 254 RLVFNRTSRPTAAAASSTAASKRTKPTSAPSATVTKKAKPSPAPKKHEPTQAPSPPPETS 313

Query: 152 K 150
           +
Sbjct: 314 R 314


>tr|A4HU21|A4HU21_LEIIN Putative uncharacterized protein OS=Leishmania
            infantum GN=LinJ09.1050 PE=4 SV=1
          Length = 5363

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 25/86 (29%), Positives = 39/86 (45%)
 Frame = -3

Query: 332  NERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETS 153
            +E +L + F   S   ++G   R +QSL +ATL T                 PS P + S
Sbjct: 1762 SEEELVLSFAVSSGDDTIGTVARRSQSLSSATLHT----------------MPSTPSDRS 1805

Query: 152  KVLLGSLPHLSAFPLQPAHSFLLPLS 75
             V   ++P    +P++PA +  LP S
Sbjct: 1806 SVTAAAVPTTIMYPMRPAEA--LPTS 1829


>tr|Q9CIW5|Q9CIW5_LACLA Putative uncharacterized protein ycdJ
           OS=Lactococcus lactis subsp. lactis GN=ycdJ PE=4 SV=1
          Length = 803

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -3

Query: 296 SRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETSKVLLGSLPHLSA 117
           S P+S      S +   +++  +   SSS++P    T+ APS P+++SK ++G    LSA
Sbjct: 93  SSPTSQASLAPSTEGSASSSGVSASMSSSSAPTSSSTSKAPSFPMDSSKAIVGVDSSLSA 152


>tr|B1GBH3|B1GBH3_9BURK Putative uncharacterized protein
           OS=Burkholderia graminis C4D1M GN=BgramDRAFT_6710 PE=4
           SV=1
          Length = 271

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 176 PSAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPHCRSKS*STAPA 36
           P+ PIE   + + S+P     PL P     LP  PH  S+S +  PA
Sbjct: 194 PAEPIEPLPLPVDSVPPAEPLPLLPVPELRLPEPPHAPSESSAATPA 240


>tr|Q4QHS5|Q4QHS5_LEIMA Putative uncharacterized protein OS=Leishmania
            major GN=LmjF09.0990 PE=4 SV=1
          Length = 5381

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = -3

Query: 332  NERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETS 153
            +E +LK+     S   ++G   R +QSL +ATL T                 PS P + S
Sbjct: 1773 SEEELKLGSAVSSGDDTIGTVARRSQSLSSATLHT----------------MPSTPSDRS 1816

Query: 152  KVLLGSLPHLSAFPLQPAHS 93
             V   ++P    +P++PA +
Sbjct: 1817 SVTAAAVPTAIMYPMRPAEA 1836