DK943881 |
Clone id |
YMU02A01NGRL0004_E05 |
Library |
YMU02 |
Length |
556 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_E05. 5' end sequence. |
Accession |
DK943881 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL68Contig1 |
Sequence |
ACCTTTTCGAACGAAAGAGTTGGGAAGGGAGTACAGCTCTCTGCACACACTCGTTCACCT CTTTTGCTGATTCCTCCCTCACGCAGAGAGTGCTTGGAAGGAACCATGGCAGTCGTGTCA GCCACCGTTACACCGGCCCTCGTTCCGAACACCTGCGTGTCGAAGTCTCTCAGCTCCTCC AGCGCTAGGCCCGCTGCAGGTCTGCCGGCCCTGAGGAAGATGAATGTTTCTTGCTCTTTG AAGGAGGAACATGAGTCAAGGAAGGTTGAGCCGGCGGCTGCAGGTGCACTTGCAGCCTCC ATCATGGCTGTTGCCCATCCTGCGCTTGCCCTTGTGGATGATCGCCTTAGCACCGAGGGT ACTGGACTTTCTCTTGGTGTGAGCAACCCCCTAATTGTCTGGATTCTTCTCGGCGTCGCA ACACTAATCTGGGCTCTCTTCTTCGTATATGCATCTTCACTGAAGGAAGATGATGACTCT GGGCTCGCGTTGTAAGAGCTGTGAATCGAGCTTCTGTATTGTATATTCAATTCTGATCAA TGTCAAAAGTTGTCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q41387 |
Definition |
sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea |
Align length |
56 |
Score (bit) |
82.8 |
E-value |
1.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943881|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_E05, 5' (556 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c... 83 1e-15 sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, c... 81 3e-15 sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, c... 81 4e-15 sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c... 59 2e-08 sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (F... 37 0.085 sp|O60069|SWF1_SCHPO Palmitoyltransferase swf1 OS=Schizosaccharo... 31 3.6 sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo s... 31 3.6 sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taur... 30 8.0 sp|Q18ER3|DP2L_HALWD DNA polymerase II large subunit OS=Haloquad... 30 8.0
>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1 Length = 137
Score = 82.8 bits (203), Expect = 1e-15 Identities = 38/56 (67%), Positives = 48/56 (85%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 +PA+ALVD+R+STEGTGL G+SN L+ WIL GV LIWAL+FVYAS L+ED++SG Sbjct: 79 NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESG 134
>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1 Length = 124
Score = 81.3 bits (199), Expect = 3e-15 Identities = 37/55 (67%), Positives = 48/55 (87%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 PA+ALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L+ED++SG Sbjct: 66 PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120
>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2 Length = 133
Score = 80.9 bits (198), Expect = 4e-15 Identities = 37/56 (66%), Positives = 46/56 (82%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 +PA+ALVD+R+STEGTGL G+SN L+ WIL GV LIW FFVY SSL+ED++SG Sbjct: 75 NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESG 130
>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1 Length = 115
Score = 58.9 bits (141), Expect = 2e-08 Identities = 24/55 (43%), Positives = 40/55 (72%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDS 480 HPA ALVD+R++ +GTG GV++P++ W+LLGV +WA++F+ L + +D+ Sbjct: 55 HPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDA 109
>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (Fragment) OS=Triticum aestivum GN=psbW PE=1 SV=1 Length = 20
Score = 36.6 bits (83), Expect = 0.085 Identities = 16/19 (84%), Positives = 19/19 (100%) Frame = +1
Query: 331 LVDDRLSTEGTGLSLGVSN 387 LVD+R+STEGTGLSLG+SN Sbjct: 1 LVDERMSTEGTGLSLGLSN 19
>sp|O60069|SWF1_SCHPO Palmitoyltransferase swf1 OS=Schizosaccharomyces pombe GN=swf1 PE=2 SV=1 Length = 356
Score = 31.2 bits (69), Expect = 3.6 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = +1
Query: 337 DDRLSTEGTGLS---LGVSNPLIVWILLGVATLIWALFFVYASSLKE 468 D R S LS L +NPL+V++ L + T+ A FF+Y SSL + Sbjct: 58 DGRCSAAMRSLSNYVLYKNNPLVVFLYLALITIGIASFFIYGSSLTQ 104
>sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo sapiens GN=KPRP PE=1 SV=1 Length = 579
Score = 31.2 bits (69), Expect = 3.6 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +2
Query: 98 KEPWQSCQPPLHRPSFRTPACRSLSAPPALGPLQVCRP 211 + P Q C PP RP R C SL P P Q+ P Sbjct: 393 ESPLQRCPPPAPRPRLRPEPCISLEPRPRPLPRQLSEP 430
>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1 Length = 3796
Score = 30.0 bits (66), Expect = 8.0 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = -2
Query: 528 EYTIQKLDSQLLQREPRVIIFLQ*RCIYEEESPD*CCDAEKNPDN*GVAHTKRKSSTLGA 349 E +Q +++L QR R+ +F R +Y+E +PD D P++ + T + + Sbjct: 2624 ENPVQATETELAQRLQRLTVFAVNRIVYQEFNPD-IIDILSTPESTTQSRTSASQTEISE 2682
Query: 348 KAIIHK 331 + I H+ Sbjct: 2683 ENIHHE 2688
>sp|Q18ER3|DP2L_HALWD DNA polymerase II large subunit OS=Haloquadratum walsbyi (strain DSM 16790) GN=polC PE=3 SV=1 Length = 2289
Score = 30.0 bits (66), Expect = 8.0 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = -2
Query: 210 GRQTCSGPSAGGAERLRHAGVRNEGRCNGG*H 115 GR PSA GA RLR+ RN G G H Sbjct: 343 GRPVFGHPSAAGAFRLRYGRARNHGFATAGVH 374
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PJA9 |
Definition |
tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
55 |
Score (bit) |
87.0 |
E-value |
6.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943881|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_E05, 5' (556 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Popul... 87 6e-16 tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomit... 85 2e-15 tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella paten... 85 2e-15 tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Popul... 84 4e-15 tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein ... 83 9e-15 tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 82 1e-14 tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomit... 82 1e-14 tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert seque... 81 3e-14 tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein ... 81 3e-14 tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein ... 81 3e-14 tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein ... 81 3e-14 tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein ... 81 3e-14 tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea... 81 3e-14 tr|A2WVK4|A2WVK4_ORYSI Putative uncharacterized protein OS=Oryza... 81 3e-14 tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medic... 81 4e-14 tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea... 81 4e-14 tr|A7QVP6|A7QVP6_VITVI Chromosome chr14 scaffold_190, whole geno... 81 4e-14 tr|A5C3A9|A5C3A9_VITVI Putative uncharacterized protein OS=Vitis... 81 4e-14 tr|A7PUM2|A7PUM2_VITVI Chromosome chr7 scaffold_31, whole genome... 80 6e-14 tr|A1YMY4|A1YMY4_BRACM Component of 6.1 kDa polypeptide of photo... 80 6e-14 tr|Q41908|Q41908_ARATH Photosystem II 7kD protein OS=Arabidopsis... 80 1e-13 tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza... 79 2e-13 tr|Q8W536|Q8W536_9FABA Photosystem II reaction center (Fragment)... 78 4e-13 tr|Q9AXP0|Q9AXP0_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 69 2e-10 tr|Q9AXN8|Q9AXN8_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 67 6e-10 tr|A8JFQ7|A8JFQ7_CHLRE Photosystem II reaction center W protein ... 59 2e-07 tr|A2SY30|A2SY30_MESVI Photosystem II reaction center W protein ... 54 7e-06 tr|Q944K9|Q944K9_ARATH At2g30570/T6B20.8 OS=Arabidopsis thaliana... 53 1e-05 tr|B5A4J5|B5A4J5_GYMST Photosystem II reaction center W protein ... 52 3e-05 tr|Q7XYI4|Q7XYI4_BIGNA Photosystem II protein PsbW OS=Bigelowiel... 49 1e-04
>tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 133
Score = 87.0 bits (214), Expect = 6e-16 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 PALALVD+RLSTEGTGL G+SN L+VWILLGV IW+L+FVY SSL ED+DSG Sbjct: 76 PALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFVYTSSLDEDEDSG 130
>tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_128580 PE=4 SV=1 Length = 142
Score = 85.1 bits (209), Expect = 2e-15 Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 483 HP ALVD+RLSTEGTGL LGVSNP + WIL+GV L+WA++F Y+S+L E DDDSG Sbjct: 83 HPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSG 139
>tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_232256 PE=4 SV=1 Length = 64
Score = 85.1 bits (209), Expect = 2e-15 Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 483 HP ALVD+RLSTEGTGL LGVSNP + WIL+GV L+WA++F Y+S+L E DDDSG Sbjct: 5 HPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSG 61
>tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 134
Score = 84.3 bits (207), Expect = 4e-15 Identities = 38/55 (69%), Positives = 48/55 (87%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 PALALVD+R+STEGTGL G+SN L+VWILLGV LIWAL+F Y ++L+ED++SG Sbjct: 77 PALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEEDEESG 131
>tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein OS=Zea mays PE=2 SV=1 Length = 127
Score = 83.2 bits (204), Expect = 9e-15 Identities = 40/55 (72%), Positives = 47/55 (85%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 P LALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ VY S+L EDDDSG Sbjct: 70 PXLALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDEDDDSG 124
>tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomitrella patens PE=2 SV=1 Length = 69
Score = 82.4 bits (202), Expect = 1e-14 Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 1/57 (1%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 483 HP ALVD+RLSTEGTGL LG+SN + WIL+GV LIWAL+F Y+S+L E DDDSG Sbjct: 10 HPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSG 66
>tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_9752 PE=4 SV=1 Length = 67
Score = 82.4 bits (202), Expect = 1e-14 Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 1/57 (1%) Frame = +1
Query: 316 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 483 HP ALVD+RLSTEGTGL LG+SN + WIL+GV LIWAL+F Y+S+L E DDDSG Sbjct: 8 HPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSG 64
>tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 124
Score = 81.3 bits (199), Expect = 3e-14 Identities = 37/55 (67%), Positives = 48/55 (87%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 PA+ALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L+ED++SG Sbjct: 66 PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120
>tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein OS=Zea mays PE=2 SV=1 Length = 127
Score = 81.3 bits (199), Expect = 3e-14 Identities = 38/55 (69%), Positives = 47/55 (85%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 PALALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L ED++SG Sbjct: 69 PALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESG 123
>tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein OS=Zea mays PE=2 SV=1 Length = 131
Score = 81.3 bits (199), Expect = 3e-14 Identities = 38/55 (69%), Positives = 47/55 (85%) Frame = +1
Query: 319 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 483 PALALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L ED++SG Sbjct: 73 PALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESG 127
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