BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943883|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_E09, 5'
         (199 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P76339|YEDV_ECOLI Putative sensor-like histidine kinase yedV ...    31   2.2  
sp|Q6DBR0|RUSD4_DANRE RNA pseudouridylate synthase domain-contai...    29   8.4  

>sp|P76339|YEDV_ECOLI Putative sensor-like histidine kinase yedV
           OS=Escherichia coli (strain K12) GN=yedV PE=1 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 188 QNSLSHTKTLVQVQHSIAQHFKSLPQGIPSSSRGIIFLASISKNNI 51
           Q +LS T+++ + Q +IA + + L + I   +  I+FLA   KNN+
Sbjct: 259 QVTLSQTRSIAEYQKTIAGNIEEL-ENISRLTENILFLARADKNNV 303


>sp|Q6DBR0|RUSD4_DANRE RNA pseudouridylate synthase
           domain-containing protein 4 OS=Danio rerio GN=rpusd4
           PE=2 SV=1
          Length = 358

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 194 KAQNSLSHTKTLVQVQHSIAQHFKSLPQGIPSSSRGIIFLASISK 60
           K + +  H +TL+Q  H +   + ++  G+P  S G+I +  I +
Sbjct: 157 KTEEAAEHVQTLIQ-SHKVEMKYLAITVGVPVPSEGVIDIPVIER 200

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943883|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_E09, 5'
         (199 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******