DK943897 |
Clone id |
YMU02A01NGRL0004_F04 |
Library |
YMU02 |
Length |
392 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_F04. 5' end sequence. |
Accession |
DK943897 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2Contig2 |
Sequence |
GTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCAAGATGCCGC TGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGT GCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTC TGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCCATTTCC CACTGGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTGCATACAT AATGAAACAACTTCCCAGTGGTGGCTTCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22573 |
Definition |
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis |
Align length |
59 |
Score (bit) |
98.6 |
E-value |
9.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943897|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_F04, 5' (330 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 97 2e-20 sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 97 3e-20 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 96 4e-20 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 96 4e-20 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 96 4e-20 sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 96 6e-20 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 96 6e-20 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 95 1e-19 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 95 1e-19 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 95 1e-19 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 94 2e-19 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 94 2e-19 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 94 2e-19 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 94 2e-19 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 94 2e-19 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 93 4e-19 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 93 5e-19 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 93 5e-19 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 93 5e-19 sp|P31333|RBS_GOSHI Ribulose bisphosphate carboxylase small chai... 92 6e-19 sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha... 92 8e-19 sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 92 1e-18
>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1 Length = 179
Score = 98.6 bits (244), Expect = 9e-21 Identities = 43/59 (72%), Positives = 48/59 (81%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 120 YDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1 Length = 179
Score = 98.6 bits (244), Expect = 9e-21 Identities = 43/59 (72%), Positives = 48/59 (81%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 120 YDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1 Length = 179
Score = 97.4 bits (241), Expect = 2e-20 Identities = 42/59 (71%), Positives = 48/59 (81%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++P Sbjct: 120 YDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 96.7 bits (239), Expect = 3e-20 Identities = 41/59 (69%), Positives = 47/59 (79%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP Sbjct: 119 YDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1 Length = 171
Score = 96.3 bits (238), Expect = 4e-20 Identities = 41/59 (69%), Positives = 48/59 (81%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYWVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V KP Sbjct: 112 YDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1 Length = 189
Score = 96.3 bits (238), Expect = 4e-20 Identities = 42/59 (71%), Positives = 47/59 (79%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V KP Sbjct: 128 YDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 96.3 bits (238), Expect = 4e-20 Identities = 39/59 (66%), Positives = 47/59 (79%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1 Length = 179
Score = 95.9 bits (237), Expect = 6e-20 Identities = 42/59 (71%), Positives = 47/59 (79%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 120 YDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 95.9 bits (237), Expect = 6e-20 Identities = 40/60 (66%), Positives = 46/60 (76%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 181 YDGRYW MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP+ Sbjct: 119 YDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 95.1 bits (235), Expect = 1e-19 Identities = 39/59 (66%), Positives = 46/59 (77%) Frame = +2
Query: 2 YDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 178 YDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 18 YDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
60 |
Score (bit) |
117.0 |
E-value |
4.0e-25 |
Report |
|