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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943907
Clone id YMU02A01NGRL0004_F18
Library
Length 353
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_F18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATGTTGAGGGTGTATCTAACCTTAATGTGTACACATCTTAAGAGGTGGCAAAAGTGAAG
TTGGAGAAACAAACAACCATTAAAGCCAGAAGTGAAGCATCTTCTTTACAAAAAAATATT
CAAGGATAGGGGTTCAAGCTGCTTAACCTTTCTATTAGCTTTGATGACGCCACTGCTGAT
GCGGATGAGGATATTGCGTATGAATATGAGAGTACTTCATGAGGAAATTTCTGCCGTTCA
CAAGTCCAATTGATTAGTTGGTTTACAAAGCTTCTTAAAAATGGAAAGGTCTCTTACATG
TTTTGCCGAGGTATCTTGTACACTTAATCAAGTAAAATCTAAAGAATGCCTGG
■■Homology search results ■■ -
sp_hit_id P56721
Definition sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila melanogaster
Align length 16
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943907|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_F18, 5'
         (353 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila ...    30   4.8  

>sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila
           melanogaster GN=kn PE=2 SV=2
          Length = 575

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 211 SHIHTQYPHPHQQWRH 164
           +H H  YPHPHQ W +
Sbjct: 549 AHPHHHYPHPHQPWHN 564
tr_hit_id Q93VK7
Definition tr|Q93VK7|Q93VK7_ARATH AT5g14910/F2G14_30 (Putative uncharacterized protein) OS=Arabidopsis thaliana
Align length 54
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943907|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_F18, 5'
         (353 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q93VK7|Q93VK7_ARATH AT5g14910/F2G14_30 (Putative uncharacteri...    55   1e-06
tr|A7PMF1|A7PMF1_VITVI Chromosome chr14 scaffold_21, whole genom...    49   9e-05
tr|Q5WMQ0|Q5WMQ0_ORYSJ Putative uncharacterized protein OSJNBa00...    49   2e-04
tr|Q0DJ21|Q0DJ21_ORYSJ Os05g0337400 protein OS=Oryza sativa subs...    49   2e-04
tr|A3B2T0|A3B2T0_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2Y3C4|A2Y3C4_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q9LFR4|Q9LFR4_ARATH Putative uncharacterized protein F2G14_30...    48   3e-04
tr|B6TI14|B6TI14_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|A9S9T8|A9S9T8_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9T080|A9T080_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9RV35|A9RV35_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9NT30|A9NT30_PICSI Putative uncharacterized protein OS=Picea...    38   0.22 

>tr|Q93VK7|Q93VK7_ARATH AT5g14910/F2G14_30 (Putative uncharacterized
           protein) OS=Arabidopsis thaliana GN=At5g14910 PE=2 SV=1
          Length = 178

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = +1

Query: 1   DVEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           D++GVSNL V  S  VA V+L KQTT++A   AS+L + IQG GFKL  L++SF
Sbjct: 117 DIDGVSNLKVQVSEGVAVVELLKQTTVQATGVASNLVETIQGAGFKLQTLNLSF 170


>tr|A7PMF1|A7PMF1_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020796001
           PE=4 SV=1
          Length = 153

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 26/54 (48%), Positives = 35/54 (64%)
 Frame = +1

Query: 1   DVEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           + EG++ L V     +A V L KQTT++A   ASSL + IQG GFKL  L++SF
Sbjct: 92  ETEGITTLKVQVVEGIASVALTKQTTVQATGVASSLVETIQGSGFKLQTLNLSF 145


>tr|Q5WMQ0|Q5WMQ0_ORYSJ Putative uncharacterized protein
           OSJNBa0053E01.2 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0053E01.2 PE=4 SV=1
          Length = 536

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +1

Query: 4   VEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           VEGVS+L V     +  V L K+TT++A   AS+L + IQG GFKL  LS+SF
Sbjct: 415 VEGVSDLEVLIEEGIGSVVLTKETTVQATGVASNLVEAIQGAGFKLQTLSLSF 467


>tr|Q0DJ21|Q0DJ21_ORYSJ Os05g0337400 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0337400 PE=4 SV=1
          Length = 346

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +1

Query: 4   VEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           VEGVS+L V     +  V L K+TT++A   AS+L + IQG GFKL  LS+SF
Sbjct: 88  VEGVSDLEVLIEEGIGSVVLTKETTVQATGVASNLVEAIQGAGFKLQTLSLSF 140


>tr|A3B2T0|A3B2T0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017352 PE=4 SV=1
          Length = 160

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +1

Query: 4   VEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           VEGVS+L V     +  V L K+TT++A   AS+L + IQG GFKL  LS+SF
Sbjct: 88  VEGVSDLEVLIEEGIGSVVLTKETTVQATGVASNLVEAIQGAGFKLQTLSLSF 140


>tr|A2Y3C4|A2Y3C4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19510 PE=4 SV=1
          Length = 160

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +1

Query: 4   VEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           VEGVS+L V     +  V L K+TT++A   AS+L + IQG GFKL  LS+SF
Sbjct: 88  VEGVSDLEVLIEEGIGSVVLTKETTVQATGVASNLVEAIQGAGFKLQTLSLSF 140


>tr|Q9LFR4|Q9LFR4_ARATH Putative uncharacterized protein F2G14_30
           OS=Arabidopsis thaliana GN=F2G14_30 PE=4 SV=1
          Length = 175

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 28/54 (51%), Positives = 37/54 (68%)
 Frame = +1

Query: 1   DVEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           D++GVSNL V  S  VA V+   QTT++A   AS+L + IQG GFKL  L++SF
Sbjct: 117 DIDGVSNLKVQVSEGVAVVE---QTTVQATGVASNLVETIQGAGFKLQTLNLSF 167


>tr|B6TI14|B6TI14_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 161

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 25/53 (47%), Positives = 34/53 (64%)
 Frame = +1

Query: 4   VEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           +EGV +L V     +  V L K+TT++A   AS+L + IQG GFKL  LS+SF
Sbjct: 91  MEGVKDLEVLIEEGIGSVVLTKETTVQATGVASNLVEAIQGAGFKLQTLSLSF 143


>tr|A9S9T8|A9S9T8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163651 PE=4 SV=1
          Length = 236

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 25/53 (47%), Positives = 32/53 (60%)
 Frame = +1

Query: 4   VEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           +EGVS + VY     A V+L KQT I+A   ASSL + I   GFK+  LS+ F
Sbjct: 157 IEGVSQIKVYVEEGAATVELVKQTDIQATGVASSLVETIVQAGFKIQALSLGF 209


>tr|A9T080|A9T080_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167413 PE=4 SV=1
          Length = 194

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/54 (46%), Positives = 33/54 (61%)
 Frame = +1

Query: 1   DVEGVSNLNVYTS*EVAKVKLEKQTTIKARSEASSLQKNIQG*GFKLLNLSISF 162
           + EGVS + VY     A V+L KQT I+A   ASSL + I+  GFK+  LS+ F
Sbjct: 120 ETEGVSQVKVYVLEGAATVELVKQTDIQATGVASSLVQLIETAGFKMQALSLGF 173