DK943913
Clone id YMU02A01NGRL0004_G01
Library
Length 232
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_G01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGG
TGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCA
CGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGAC
CGATAGCGAAGCAGTACCGTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P09695
Definition sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169)
Align length 36
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943913|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_G01, 5'
(203 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str... 30 4.9
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1 30 4.9
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra... 30 4.9
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1 30 4.9

>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
AD169) GN=TRS1 PE=3 SV=1
Length = 788

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2

Query: 47 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
Length = 4998

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2

Query: 193 CFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA*ASCTSGYWTI 62
C + G G+ LT WS G C+P + A + G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
AD169) GN=IRS1 PE=3 SV=1
Length = 846

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2

Query: 47 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2

Query: 2 ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 106
E ++GF L G AV C P DG++ V + AS NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 89.0
E-value 1.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943913|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_G01, 5'
(203 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 89 1e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 75 2e-12
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 60 7e-08
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 53 4e-07
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 52 1e-05
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 52 2e-05
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 50 4e-05
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 49 1e-04
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 49 1e-04
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 49 1e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 48 2e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 48 3e-04
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 46 0.001
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 45 0.002
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.005
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 43 0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 43 0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 43 0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 43 0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 43 0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen... 43 0.009
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 41 0.026
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 41 0.026
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen... 41 0.026
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost... 40 0.075
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin... 39 0.098

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 89.0 bits (219), Expect = 1e-16
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 89.0 bits (219), Expect = 1e-16
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 89.0 bits (219), Expect = 1e-16
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 89.0 bits (219), Expect = 1e-16
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
(Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
Length = 52

Score = 74.7 bits (182), Expect = 2e-12
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = +2

Query: 59 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199
G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
Length = 44

Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = -2

Query: 202 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 95
SRY FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 9 SRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
PE=4 SV=1
Length = 390

Score = 53.1 bits (126), Expect(2) = 4e-07
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2

Query: 202 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 107
SRY FAI H +FSL RWS LIHTGF VPHAT
Sbjct: 241 SRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



Score = 23.9 bits (50), Expect(2) = 4e-07
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3

Query: 90 LAVLPATGLSPSGVQH 43
L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
Length = 101

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = -3

Query: 201 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55
HGT SLSV++EYLA +GGP F +DF CP LL + TGLSP+
Sbjct: 33 HGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
Length = 259

Score = 51.6 bits (122), Expect = 2e-05
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = -3

Query: 201 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55
HGT+SLSVT+EYL L+ GP F +DF CP LL + TGLSP+
Sbjct: 109 HGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154


>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment)
OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1
Length = 171

Score = 50.4 bits (119), Expect = 4e-05
Identities = 27/48 (56%), Positives = 31/48 (64%)
Frame = -3

Query: 201 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSP 58
HGT SLSV+QEYLAL+ GP F +D CP LL + A TGLSP
Sbjct: 25 HGTGSLSVSQEYLALEDGPPIFRQDITCPALLDFTLDEA--SVTGLSP 70