DK943920 |
Clone id |
YMU02A01NGRL0004_G08 |
Library |
YMU02 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_G08. 5' end sequence. |
Accession |
DK943920 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL98Contig1 |
Sequence |
GACTGTTAACTGCGCAAAAATGACGAGGACAATAACTGTCAGGAGGGACTACTTGCATTT CGTGAAGAAATATCAAAGGTATGAGAAGAGGCATTCGAATTTGTCTGCCCACGTGTCTCC TTGCTTCCGTGTGAAAGAGGGGGACAAGGTTATTATCGGGCAGTGCCGGCCTCTTTCAAA GACTGTAAGATTCAACGTCTTGAAGGTCTTTCCTATGGGAGCCGCAGAGGGTGGCAAGAA GGCATTCACTGCAATGTAGTGTACCGTAGTTTTCCATCGAACCTAATTTTTGTCTAAATT TCATGGGTACCTTGGACTCTTGTGCGAAGGTCACTATTTTGTGAAGCTAATGTTCACTGT CGCTTCCAAGAGTTGAGTTTTTTTCAACGCAACATTTTTACATGTTTATTGTTTGAAGAC AAAGAATCATACTTGCATCAGAGGGCTTTTTGTGCTGGACGATTTGTTTGTGTTGTAAAT GGCTCANAAGAAACATCAGTTCTGAACAAGTGACCATTTTGGGTTAAAAAAAAAAAAAAA AAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25460 |
Definition |
sp|P25460|RS11_MAIZE 40S ribosomal protein S11 OS=Zea mays |
Align length |
84 |
Score (bit) |
144.0 |
E-value |
3.0e-34 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S6F7 |
Definition |
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
86 |
Score (bit) |
156.0 |
E-value |
5.0e-37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943920|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_G08, 5' (525 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 156 5e-37 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 156 5e-37 tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 145 9e-34 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 144 3e-33 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 142 8e-33 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 142 8e-33 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 142 1e-32 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 142 1e-32 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 142 1e-32 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 141 2e-32 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 141 2e-32 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 140 4e-32 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 140 5e-32 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 139 7e-32 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 139 7e-32 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 139 7e-32 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 139 1e-31 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 136 6e-31 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 136 6e-31 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 134 4e-30 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 134 4e-30 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 132 8e-30 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 132 8e-30 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 132 1e-29 tr|Q6T346|Q6T346_QUEPE Ribosomal protein S11 (Fragment) OS=Querc... 129 1e-28 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 128 2e-28 tr|Q209Q5|Q209Q5_9CHLO 40S ribosomal protein S11 OS=Chlamydomona... 127 3e-28 tr|A3BQN0|A3BQN0_ORYSJ Putative uncharacterized protein OS=Oryza... 127 3e-28 tr|Q017I2|Q017I2_OSTTA RS11_EUPES 40S ribosomal protein S11 (ISS... 127 4e-28 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 127 4e-28
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 156 bits (395), Expect = 5e-37 Identities = 75/86 (87%), Positives = 81/86 (94%), Gaps = 1/86 (1%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 TVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQCRPLSK Sbjct: 75 TVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEGG-KKAFTAM 256 TVRFNVLKV PMGA++GG KK FTA+ Sbjct: 135 TVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 156 bits (395), Expect = 5e-37 Identities = 75/86 (87%), Positives = 81/86 (94%), Gaps = 1/86 (1%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 TVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQCRPLSK Sbjct: 75 TVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEGG-KKAFTAM 256 TVRFNVLKV PMGA++GG KK FTA+ Sbjct: 135 TVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 145 bits (367), Expect = 9e-34 Identities = 68/85 (80%), Positives = 75/85 (88%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLH++KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRP+SK Sbjct: 75 TCHSAKMQRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISK 134
Query: 182 TVRFNVLKVFPMGAAEGGKKAFTAM 256 TVRFNVLKV P GAA GGKKAFT + Sbjct: 135 TVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 144 bits (362), Expect = 3e-33 Identities = 68/84 (80%), Positives = 74/84 (88%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEGGKKAFTA 253 TVRFNV+KV P G+A GKKAFTA Sbjct: 135 TVRFNVVKVIPAGSAAAGKKAFTA 158
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 142 bits (359), Expect = 8e-33 Identities = 69/86 (80%), Positives = 75/86 (87%), Gaps = 1/86 (1%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEG-GKKAFTAM 256 TVRFNVLKV P G++ G GKKAFT M Sbjct: 135 TVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 160
Score = 142 bits (359), Expect = 8e-33 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T AKMTRTI VRRDYLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEG-GKKAFTAM 256 TVRFNVLKV P G++ G KKAFTA+ Sbjct: 135 TVRFNVLKVIPAGSSSGSAKKAFTAI 160
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 142 bits (358), Expect = 1e-32 Identities = 67/84 (79%), Positives = 73/84 (86%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEGGKKAFTA 253 TVRFNV+KV P G+ GGKKAF A Sbjct: 135 TVRFNVIKVIPAGSTGGGKKAFIA 158
>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 142 bits (358), Expect = 1e-32 Identities = 69/86 (80%), Positives = 75/86 (87%), Gaps = 1/86 (1%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEG-GKKAFTAM 256 TVRFNVLKV P G++ G GKKAFT M Sbjct: 135 TVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 142 bits (357), Expect = 1e-32 Identities = 66/85 (77%), Positives = 75/85 (88%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLH+V+KYQRYEKRHSN++AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHYVRKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGAAEGGKKAFTAM 256 TVRFNVLKV P G+ GGKKAF A+ Sbjct: 135 TVRFNVLKVIPAGSKGGGKKAFAAV 159
>tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subsp. japonica GN=OJ1773_H01.103 PE=2 SV=1 Length = 161
Score = 141 bits (356), Expect = 2e-32 Identities = 70/86 (81%), Positives = 74/86 (86%), Gaps = 2/86 (2%) Frame = +2
Query: 2 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 181 T + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSK 134
Query: 182 TVRFNVLKVFPMGA--AEGGKKAFTA 253 TVRFNVLKV P G+ GGKKAFTA Sbjct: 135 TVRFNVLKVIPAGSTGGSGGKKAFTA 160
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