NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943922
Clone id YMU02A01NGRL0004_G10
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_G10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCATGGACTCGGAGGTAAGGGCTATTATGGCGCAATACATGCCGCTTGAAAGTCAGGATG
AGGTGCATCATCACGCTGAGGAGGGAGGAAGATAAGTTTGGCATGGTGAATAGCGATCAT
CTGTGAAGAGCGTTTGATGCAGCTGAGAGCCAGTGAATGGGTCATGGCATTCACAATAGC
ATCAGATATTCTACGGCAGGGACAATGCTTTGCCCATGATTTTCCCACGCATGGGTATGG
CTCAACATTCTCAGCCTTCATCACATTGACCTATGCAGGCAAAGAGCACATTTGTTTTTT
GTGCTTGATTCTCGAGATCATTGACTTGTATACCATAATGTTACCATCTGAATATAGCTC
AACAGAAATGGAGAACCTGGCTTTGATGTCATTGTAGAATTATCAACTCTTTTTATAATA
TCAGATCAGATTAGTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q56ZQ3
Definition sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana
Align length 27
Score (bit) 43.5
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943922|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_G10, 5'
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis ...    44   4e-04
sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis ...    43   5e-04
sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum ...    41   0.002
sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis ...    35   0.10 
sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis ...    35   0.14 
sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis ...    34   0.30 
sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis ...    33   0.52 
sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11 ...    30   3.4  
sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis ...    30   4.4  
sp|A6L9D2|OXAA_PARD8 Inner membrane protein oxaA OS=Parabacteroi...    30   5.7  
sp|Q14258|TRI25_HUMAN Tripartite motif-containing protein 25 OS=...    29   7.5  
sp|Q7MTR7|NHAA_PORGI Na(+)/H(+) antiporter nhaA OS=Porphyromonas...    29   7.5  
sp|A9JRJ2|K1358_XENTR UPF0584 protein KIAA1358 homolog OS=Xenopu...    29   7.5  
sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN...    29   9.8  
sp|A7TNS8|CAF4_VANPO CCR4-associated factor 4 homolog OS=Vanderw...    29   9.8  

>sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis
           thaliana GN=VSR4 PE=2 SV=2
          Length = 628

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  +
Sbjct: 599 MDSEIRAIMAQYMPLDSQPEVPNHTND 625


>sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis
           thaliana GN=VSR3 PE=2 SV=1
          Length = 628

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ E+ +H  +
Sbjct: 599 MDSEIRAIMAQYMPLDSQPEIPNHVND 625


>sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum
           GN=BP80 PE=1 SV=1
          Length = 623

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHH 74
           MDSE+RAIMAQYMPL+SQ+E  +H
Sbjct: 594 MDSEIRAIMAQYMPLDSQEEGPNH 617


>sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis
           thaliana GN=VSR1 PE=1 SV=2
          Length = 623

 Score = 35.4 bits (80), Expect = 0.10
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQ 56
           MD+E+R IMAQYMPLESQ
Sbjct: 595 MDAEIRGIMAQYMPLESQ 612


>sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis
           thaliana GN=VSR6 PE=2 SV=2
          Length = 622

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQD 59
           MDSE+ AIM+QYMPLESQ+
Sbjct: 584 MDSEIMAIMSQYMPLESQN 602


>sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis
           thaliana GN=VSR2 PE=2 SV=1
          Length = 625

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLES 53
           MDSE+RAIMAQYMPL++
Sbjct: 597 MDSEIRAIMAQYMPLDN 613


>sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis
           thaliana GN=VSR7 PE=2 SV=2
          Length = 625

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQ 56
           MDSE+  IM+QYMPLESQ
Sbjct: 594 MDSEIMTIMSQYMPLESQ 611


>sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11
            OS=Homo sapiens GN=DDX11 PE=2 SV=1
          Length = 970

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
 Frame = -1

Query: 258  KAENVEPYPCVGKS--WAKHCPCRRISDAIV---------NAMTHSLALSC 139
            +A  ++P PC G+S  W +HC C  +S   V          A   +L LSC
Sbjct: 871  QAAGLDPSPCGGQSYLWPRHCCCAEVSPGEVGLFLMGNHTTAWRRALPLSC 921


>sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis
           thaliana GN=VSR5 PE=2 SV=1
          Length = 618

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQ 56
           MDSE+ +IM+QY+PL+SQ
Sbjct: 593 MDSEIVSIMSQYIPLDSQ 610


>sp|A6L9D2|OXAA_PARD8 Inner membrane protein oxaA OS=Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
           GN=oxaA PE=3 SV=1
          Length = 633

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 164 MAFTIASDILRQGQCFAHDFPTHGYGSTFSAFITLT--YAGKEHICFLCLILEIIDLYTI 337
           M F  A ++  Q   +AHD  T+    +++ +I +   Y G  HI   CL++ I +++  
Sbjct: 467 MFFPSAIELRHQSFLWAHDLSTYDAIFSWNKYIPIITPYFGN-HISLFCLLMTITNIFYT 525

Query: 338 MLPSEYSSTEMENLALMSL*NYQL 409
               E ++T  + +  M    Y +
Sbjct: 526 KYNMEMTNTGQQQMPGMKAMMYMM 549
tr_hit_id A9U2S8
Definition tr|A9U2S8|A9U2S8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943922|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_G10, 5'
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U2S8|A9U2S8_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A9TGU2|A9TGU2_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A9RCZ4|A9RCZ4_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A7QL63|A7QL63_VITVI Chromosome chr3 scaffold_117, whole genom...    45   0.002
tr|Q94HD5|Q94HD5_ORYSA Putative vacuolar sorting receptor protei...    44   0.005
tr|Q8H8K1|Q8H8K1_ORYSJ Putative vacuolar sorting receptor protei...    44   0.005
tr|Q339K4|Q339K4_ORYSJ Os10g0346600 protein OS=Oryza sativa subs...    44   0.005
tr|P93027|P93027_ARATH Vacuolar sorting receptor homolog OS=Arab...    44   0.005
tr|O48662|O48662_9ROSI PV72 OS=Cucurbita cv. Kurokawa Amakuri PE...    44   0.005
tr|A2Z686|A2Z686_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q9SDR8|Q9SDR8_PRUDU Vacuolar sorting receptor protein (Fragme...    43   0.007
tr|B6U4K3|B6U4K3_MAIZE Vacuolar sorting receptor 3 OS=Zea mays P...    43   0.007
tr|B4FAD8|B4FAD8_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.007
tr|A7QFP2|A7QFP2_VITVI Chromosome chr8 scaffold_88, whole genome...    43   0.007
tr|A5C8C9|A5C8C9_VITVI Putative uncharacterized protein OS=Vitis...    43   0.007
tr|B8LPV3|B8LPV3_PICSI Putative uncharacterized protein OS=Picea...    42   0.012
tr|A9S0L8|A9S0L8_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|Q2QYK3|Q2QYK3_ORYSJ Os12g0116000 protein OS=Oryza sativa subs...    41   0.034
tr|B8BNX3|B8BNX3_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034
tr|B8BIR1|B8BIR1_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034
tr|Q9AWB4|Q9AWB4_PHYPA EGF receptor-like protein (Fragment) OS=P...    40   0.044
tr|A9TBT9|A9TBT9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|A9S0J9|A9S0J9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|Q7XHX6|Q7XHX6_ORYSJ Os07g0680000 protein OS=Oryza sativa subs...    40   0.058
tr|Q10LT8|Q10LT8_ORYSJ Os03g0335300 protein OS=Oryza sativa subs...    40   0.058
tr|B8B629|B8B629_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|B8ANZ8|B8ANZ8_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A3AHP2|A3AHP2_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.058
tr|Q93X09|Q93X09_VIGMU Vacuolar sorting receptor OS=Vigna mungo ...    40   0.076
tr|B6U0J6|B6U0J6_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.099

>tr|A9U2S8|A9U2S8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100917 PE=4 SV=1
          Length = 620

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEEGGR 92
           MDSE+RAIMAQYMPL+SQ EV +H+  G R
Sbjct: 589 MDSEIRAIMAQYMPLDSQGEVQNHSHNGVR 618


>tr|A9TGU2|A9TGU2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_145371 PE=4 SV=1
          Length = 626

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+S  EV+HH  E
Sbjct: 598 MDSEIRAIMAQYMPLDSSSEVNHHLTE 624


>tr|A9RCZ4|A9RCZ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111533 PE=4 SV=1
          Length = 636

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 18/27 (66%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ E+ +H+ +
Sbjct: 607 MDSEIRAIMAQYMPLDSQSEIQNHSRD 633


>tr|A7QL63|A7QL63_VITVI Chromosome chr3 scaffold_117, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001461001
           PE=4 SV=1
          Length = 631

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  E
Sbjct: 602 MDSEIRAIMAQYMPLDSQTEVPNHVSE 628


>tr|Q94HD5|Q94HD5_ORYSA Putative vacuolar sorting receptor protein
           homolog OS=Oryza sativa GN=OSJNBa0045C13.16 PE=4 SV=1
          Length = 631

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  +
Sbjct: 601 MDSEIRAIMAQYMPLDSQGEVPNHTND 627


>tr|Q8H8K1|Q8H8K1_ORYSJ Putative vacuolar sorting receptor protein
           OS=Oryza sativa subsp. japonica GN=OSJNBb0078C13.14 PE=4
           SV=1
          Length = 643

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  +
Sbjct: 613 MDSEIRAIMAQYMPLDSQGEVPNHTND 639


>tr|Q339K4|Q339K4_ORYSJ Os10g0346600 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0346600 PE=4 SV=1
          Length = 631

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  +
Sbjct: 601 MDSEIRAIMAQYMPLDSQGEVPNHTND 627


>tr|P93027|P93027_ARATH Vacuolar sorting receptor homolog
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 630

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  +
Sbjct: 601 MDSEIRAIMAQYMPLDSQPEVPNHTND 627


>tr|O48662|O48662_9ROSI PV72 OS=Cucurbita cv. Kurokawa Amakuri PE=2
           SV=1
          Length = 624

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEEGG 89
           MDSE+RAIMAQYMPL++Q E   H   GG
Sbjct: 595 MDSEIRAIMAQYMPLDNQGETGSHVARGG 623


>tr|A2Z686|A2Z686_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33166 PE=4 SV=1
          Length = 215

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   MDSEVRAIMAQYMPLESQDEVHHHAEE 83
           MDSE+RAIMAQYMPL+SQ EV +H  +
Sbjct: 185 MDSEIRAIMAQYMPLDSQGEVPNHTND 211