DK943937 |
Clone id |
YMU02A01NGRL0004_H05 |
Library |
YMU02 |
Length |
587 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_H05. 5' end sequence. |
Accession |
DK943937 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL530Contig1 |
Sequence |
GTCATCTTTGTGAAGAGTGTTGGAAGGGCTGCGGAGCTAAATAAGCTTCTAGTGGAATGC AACTTTCCTTCAATTTGCATCCACTCGGGCATGTCGCAAGAAGAGAGGCTCACTCGCTAC AAAGGTTTCAAGGAGGGGCACAAACGTATACTCGTTGCCACTGATCTTGTTGGGAGAGGA ATAGATATCGAGCGAGTCAACATTGTTATTAACTACGACATGCCAGAAGCCGCAGATACA TATCTTCACAGGGTTGGAAGAGCGGGCAGATTTGGCACTAAAGGCTTGGCCATTACCTTT GTGGCATCTACGGAGGACTCAACTGTACTAAATCAGGTACAAGAGCGCTTTGAGGTGGAT ATCAAAGAGCTACCTGAACAAATTGATGCTACTACCTACATGCCGTCGTGGAAGATAACA GTGGTTTTCATGGAGCTTCACTTTGTACAGAGGAGCAGAGCAAGGTTGTTTGAAGTGCCT GAAATTTGTTCTGGTCAATTTGTGTTGTTTCTCGAGTTGGAGGAAATTGGCCGTTGAGGC CTTGCTTGGACAAATGTTGTTTCGATTTCAAAGCCCATTTGCTAGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LFN6 |
Definition |
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana |
Align length |
136 |
Score (bit) |
254.0 |
E-value |
2.0e-67 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SV98 |
Definition |
tr|A9SV98|A9SV98_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
136 |
Score (bit) |
258.0 |
E-value |
2.0e-67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943937|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_H05, 5' (587 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SV98|A9SV98_PHYPA Predicted protein OS=Physcomitrella paten... 258 2e-67 tr|A9TT23|A9TT23_PHYPA Predicted protein OS=Physcomitrella paten... 252 1e-65 tr|A9P9M6|A9P9M6_POPTR Putative uncharacterized protein OS=Popul... 251 2e-65 tr|A7P5S1|A7P5S1_VITVI Chromosome chr4 scaffold_6, whole genome ... 248 2e-64 tr|A7QIQ3|A7QIQ3_VITVI Chromosome chr9 scaffold_104, whole genom... 244 3e-63 tr|B8AA10|B8AA10_ORYSI Putative uncharacterized protein OS=Oryza... 243 4e-63 tr|B8AA09|B8AA09_ORYSI Putative uncharacterized protein OS=Oryza... 243 4e-63 tr|B7F820|B7F820_ORYSJ cDNA clone:J033114G10, full insert sequen... 243 4e-63 tr|B7EDH0|B7EDH0_ORYSJ cDNA clone:J013107H03, full insert sequen... 243 4e-63 tr|A2ZU90|A2ZU90_ORYSJ Putative uncharacterized protein OS=Oryza... 243 4e-63 tr|A2ZU89|A2ZU89_ORYSJ Putative uncharacterized protein OS=Oryza... 243 4e-63 tr|A4SAY8|A4SAY8_OSTLU Predicted protein (Fragment) OS=Ostreococ... 214 4e-54 tr|A8JIJ1|A8JIJ1_CHLRE Subunit of exon junction complex OS=Chlam... 207 3e-52 tr|B6AHF5|B6AHF5_9CRYT ATP-dependent RNA helicae DDX39, putative... 200 6e-50 tr|B6K783|B6K783_SCHJP ATP-dependent RNA helicase Uap56 OS=Schiz... 199 1e-49 tr|B6KST9|B6KST9_TOXGO ATP-dependent RNA helicase, putative OS=T... 199 1e-49 tr|B7GEM2|B7GEM2_PHATR Predicted protein OS=Phaeodactylum tricor... 197 3e-49 tr|Q5CVI7|Q5CVI7_CRYPV Sub2p like superfamily II helicase involv... 197 4e-49 tr|Q5CMJ1|Q5CMJ1_CRYHO Helicase OS=Cryptosporidium hominis GN=Ch... 197 4e-49 tr|B4FX58|B4FX58_MAIZE Putative uncharacterized protein OS=Zea m... 195 2e-48 tr|A7AVP6|A7AVP6_BABBO eIF-4A-like DEAD family RNA helicase, put... 194 2e-48 tr|B8LBP2|B8LBP2_THAPS Dead box family RNA helicase OS=Thalassio... 194 4e-48 tr|B0CQW6|B0CQW6_LACBS Predicted protein OS=Laccaria bicolor (st... 193 7e-48 tr|A8Q832|A8Q832_MALGO Putative uncharacterized protein OS=Malas... 193 7e-48 tr|B6TE13|B6TE13_MAIZE Spliceosome RNA helicase BAT1 OS=Zea mays... 192 9e-48 tr|Q4UC68|Q4UC68_THEAN DEAD-box family helicase, putative OS=The... 192 9e-48 tr|Q4MZY1|Q4MZY1_THEPA ATP-dependent RNA helicase, putative OS=T... 192 9e-48 tr|Q4P4M3|Q4P4M3_USTMA Putative uncharacterized protein OS=Ustil... 192 1e-47 tr|Q7RSM9|Q7RSM9_PLAYO DEAD/DEAH box helicase, putative OS=Plasm... 192 2e-47 tr|Q4YB85|Q4YB85_PLABE Helicase, putative OS=Plasmodium berghei ... 192 2e-47
>tr|A9SV98|A9SV98_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_188774 PE=4 SV=1 Length = 425
Score = 258 bits (658), Expect = 2e-67 Identities = 129/136 (94%), Positives = 131/136 (96%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG Sbjct: 290 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 349
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++ADTYLHRVGRAGRFGTKGLAITFVAS DS VLNQVQERFEVD Sbjct: 350 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASPSDSDVLNQVQERFEVD 409
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID TTYMPS Sbjct: 410 IKELPEQIDTTTYMPS 425
>tr|A9TT23|A9TT23_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_96766 PE=4 SV=1 Length = 432
Score = 252 bits (643), Expect = 1e-65 Identities = 126/133 (94%), Positives = 128/133 (96%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG Sbjct: 290 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 349
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++ADTYLHRVGRAGRFGTKGLAITFVAS DS VLNQVQERFEVD Sbjct: 350 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAPDSNVLNQVQERFEVD 409
Query: 361 IKELPEQIDATTY 399 IKELPEQID TTY Sbjct: 410 IKELPEQIDTTTY 422
>tr|A9P9M6|A9P9M6_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 428
Score = 251 bits (641), Expect = 2e-65 Identities = 125/136 (91%), Positives = 130/136 (95%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLLVECNFPSICIHSGMSQEERL RYKGFKEGHKRILVATDLVGRG Sbjct: 293 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRG 352
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERV+IVINYDMP++ADTYLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 353 IDIERVDIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 412
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TYMPS Sbjct: 413 IKELPEQIDTSTYMPS 428
>tr|A7P5S1|A7P5S1_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032637001 PE=4 SV=1 Length = 345
Score = 248 bits (632), Expect = 2e-64 Identities = 124/136 (91%), Positives = 128/136 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLLVECNFPSICIHSGM QEERLTRYKGFKEGHKRILVATDLVGRG Sbjct: 209 VIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRG 268
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++ADTYLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 269 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 328
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TY S Sbjct: 329 IKELPEQIDTSTYSMS 344
>tr|A7QIQ3|A7QIQ3_VITVI Chromosome chr9 scaffold_104, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000354001 PE=4 SV=1 Length = 434
Score = 244 bits (622), Expect = 3e-63 Identities = 121/133 (90%), Positives = 126/133 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLL+ECNFPSICIHSGM QEERLTRYK FKEGHKRILVATDLVGRG Sbjct: 291 VIFVKSVSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRG 350
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++ADTYLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 351 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 410
Query: 361 IKELPEQIDATTY 399 IKELPEQID +TY Sbjct: 411 IKELPEQIDTSTY 423
>tr|B8AA10|B8AA10_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02373 PE=4 SV=1 Length = 432
Score = 243 bits (621), Expect = 4e-63 Identities = 121/136 (88%), Positives = 128/136 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEGHKRILVATDLVGRG Sbjct: 297 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 356
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++AD+YLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 357 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 416
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TYMPS Sbjct: 417 IKELPEQIDTSTYMPS 432
>tr|B8AA09|B8AA09_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02372 PE=4 SV=1 Length = 344
Score = 243 bits (621), Expect = 4e-63 Identities = 121/136 (88%), Positives = 128/136 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEGHKRILVATDLVGRG Sbjct: 209 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 268
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++AD+YLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 269 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 328
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TYMPS Sbjct: 329 IKELPEQIDTSTYMPS 344
>tr|B7F820|B7F820_ORYSJ cDNA clone:J033114G10, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 432
Score = 243 bits (621), Expect = 4e-63 Identities = 121/136 (88%), Positives = 128/136 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEGHKRILVATDLVGRG Sbjct: 297 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 356
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++AD+YLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 357 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 416
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TYMPS Sbjct: 417 IKELPEQIDTSTYMPS 432
>tr|B7EDH0|B7EDH0_ORYSJ cDNA clone:J013107H03, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 432
Score = 243 bits (621), Expect = 4e-63 Identities = 121/136 (88%), Positives = 128/136 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEGHKRILVATDLVGRG Sbjct: 297 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 356
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++AD+YLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 357 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 416
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TYMPS Sbjct: 417 IKELPEQIDTSTYMPS 432
>tr|A2ZU90|A2ZU90_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002112 PE=4 SV=1 Length = 417
Score = 243 bits (621), Expect = 4e-63 Identities = 121/136 (88%), Positives = 128/136 (94%) Frame = +1
Query: 1 VIFVKSVGRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG 180 VIFVKSV RAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEGHKRILVATDLVGRG Sbjct: 282 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 341
Query: 181 IDIERVNIVINYDMPEAADTYLHRVGRAGRFGTKGLAITFVASTEDSTVLNQVQERFEVD 360 IDIERVNIVINYDMP++AD+YLHRVGRAGRFGTKGLAITFV+S DS VLNQVQERFEVD Sbjct: 342 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 401
Query: 361 IKELPEQIDATTYMPS 408 IKELPEQID +TYMPS Sbjct: 402 IKELPEQIDTSTYMPS 417
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