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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943946
Clone id YMU02A01NGRL0004_H15
Library
Length 298
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_H15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTGGGCGACGATACTGGAAGCTCGCGTAAGAGCCAGACGAGGCTGCGGGAGTTCAAATC
CTGCTTTTGAATCATGGTTTTACTCCTCAAAGGAATTGCGTATGGTTGTTGAAAATGAAT
TTTCCCGAACAACTGAGCTACGCTCTTTGGGTGCAGCACTCTTTTGAAAATACATGCCTA
TAGTGATTGTTCCAATGGCCTCTGTAATTGCAATATTTGCAGAAATGGCAGATACTCAAC
AGGATACTTTGAAGAAGAAGAAGAAGATCANAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q03804
Definition sp|Q03804|ENV_FIVU1 Envelope glycoprotein gp150 OS=Feline immunodeficiency virus (strain UT-113)
Align length 43
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943946|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_H15, 5'
         (271 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03804|ENV_FIVU1 Envelope glycoprotein gp150 OS=Feline immuno...    32   0.99 
sp|Q05312|ENV_FIVWO Envelope glycoprotein gp150 OS=Feline immuno...    32   1.3  
sp|Q5TYW6|CF206_DANRE UPF0685 protein C6orf206 homolog OS=Danio ...    31   2.2  
sp|P16090|ENV_FIVPE Envelope glycoprotein gp150 OS=Feline immuno...    30   2.9  
sp|P19030|ENV_FIVSD Envelope glycoprotein gp150 OS=Feline immuno...    30   3.8  
sp|P45454|DMA_SERMA DNA adenine methylase OS=Serratia marcescens...    29   8.4  
sp|Q17768|SPR3_CAEEL Suppressor of presenilin protein 3 OS=Caeno...    29   8.4  
sp|Q3ZBA0|K1358_RAT UPF0584 protein KIAA1358 homolog OS=Rattus n...    29   8.4  
sp|Q80VP0|K1358_MOUSE UPF0584 protein KIAA1358 OS=Mus musculus G...    29   8.4  

>sp|Q03804|ENV_FIVU1 Envelope glycoprotein gp150 OS=Feline
           immunodeficiency virus (strain UT-113) GN=env PE=3 SV=1
          Length = 856

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 52  VQILLLNHGFTPQRNCVW-LLKMNFPEQLSYALWVQHSFENTC 177
           +QI L+N+ F P + C+W + ++  PE      W Q ++ N C
Sbjct: 324 LQIPLINYTFGPNQTCMWNISQIQDPEIPKCGWWNQQAYYNNC 366


>sp|Q05312|ENV_FIVWO Envelope glycoprotein gp150 OS=Feline
           immunodeficiency virus (isolate Wo) GN=env PE=3 SV=1
          Length = 854

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 52  VQILLLNHGFTPQRNCVW-LLKMNFPEQLSYALWVQHSFENTC 177
           +QI L+N+ F P + C+W   ++  PE      W Q+++ N+C
Sbjct: 322 LQIPLINYTFGPNQTCMWNTSQIQDPEIPKCGWWNQNAYYNSC 364


>sp|Q5TYW6|CF206_DANRE UPF0685 protein C6orf206 homolog OS=Danio
           rerio GN=si:ch211-117l16.2 PE=2 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -2

Query: 156 LHPKSVAQLFGKIHFQQPYAIPLRSKTMIQKQDLN 52
           LHP   A+L   +HF++P  + LR+K++++  +LN
Sbjct: 177 LHPTEAAKLRNYLHFREP--VNLRNKSILEMSELN 209


>sp|P16090|ENV_FIVPE Envelope glycoprotein gp150 OS=Feline
           immunodeficiency virus (isolate Petaluma) GN=env PE=3
           SV=2
          Length = 856

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 52  VQILLLNHGFTPQRNCVW-LLKMNFPEQLSYALWVQHSFENTC 177
           +QI L+N+ F P + C+W   ++  PE      W Q ++ N+C
Sbjct: 324 LQIPLINYTFGPNQTCMWNTSQIQDPEIPKCGWWNQMAYYNSC 366


>sp|P19030|ENV_FIVSD Envelope glycoprotein gp150 OS=Feline
           immunodeficiency virus (strain San Diego) GN=env PE=3
           SV=1
          Length = 854

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 52  VQILLLNHGFTPQRNCVW-LLKMNFPEQLSYALWVQHSFENTC 177
           +QI L+N+ F P + C+W   ++  PE      W Q ++ N+C
Sbjct: 324 LQIPLINYTFGPNQTCMWNTSQIQDPEIPKCGWWNQIAYYNSC 366


>sp|P45454|DMA_SERMA DNA adenine methylase OS=Serratia marcescens
           GN=dam PE=3 SV=1
          Length = 270

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +2

Query: 161 LLKIHAYSDCSNGLCNCNICRN-----GRYSTGYFEEEE 262
           LL ++    C NGLC  N+        GRY   YF EEE
Sbjct: 109 LLFLYLNRHCYNGLCRYNLRGEFNVPFGRYKKPYFPEEE 147


>sp|Q17768|SPR3_CAEEL Suppressor of presenilin protein 3
           OS=Caenorhabditis elegans GN=spr-3 PE=2 SV=3
          Length = 684

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
 Frame = -3

Query: 230 CHFCKYCNYRG-----HWNNHYRHVFSKECCTQRA*LSCSGKFIFNNH 102
           CH C  C YRG     H   H    F  E C      +C  K+ ++ H
Sbjct: 23  CHLCGQCFYRGCGLASHLRRHAPVTFDCEHCA----YTCKHKYAYDRH 66


>sp|Q3ZBA0|K1358_RAT UPF0584 protein KIAA1358 homolog OS=Rattus
           norvegicus PE=2 SV=1
          Length = 1166

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 3   WATILEARVRARRGCGSSNPAFESWFYSSKELRMV 107
           WA   + +V  RRG  S NP   SW     E+ MV
Sbjct: 304 WAITKDRKVWFRRGVNSHNPCGTSWIEMVGEMTMV 338


>sp|Q80VP0|K1358_MOUSE UPF0584 protein KIAA1358 OS=Mus musculus
           GN=Kiaa1358 PE=2 SV=1
          Length = 1166

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 3   WATILEARVRARRGCGSSNPAFESWFYSSKELRMV 107
           WA   + +V  RRG  S NP   SW     E+ MV
Sbjct: 304 WAITKDRKVWFRRGVNSHNPCGTSWIEMVGEMTMV 338
tr_hit_id B4QQN2
Definition tr|B4QQN2|B4QQN2_DROSI GD12774 OS=Drosophila simulans
Align length 24
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943946|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_H15, 5'
         (271 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4QQN2|B4QQN2_DROSI GD12774 OS=Drosophila simulans GN=GD12774...    33   5.4  
tr|A8L1E7|A8L1E7_FRASN ErfK/YbiS/YcfS/YnhG family protein OS=Fra...    33   9.2  

>tr|B4QQN2|B4QQN2_DROSI GD12774 OS=Drosophila simulans GN=GD12774 PE=4
            SV=1
          Length = 3873

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 73   HGFTPQRNCVWLLKMNFPEQLSYA 144
            HG+TP  NC W +K  FP    YA
Sbjct: 1921 HGYTPNLNCEWTIKSQFPSHHIYA 1944


>tr|A8L1E7|A8L1E7_FRASN ErfK/YbiS/YcfS/YnhG family protein
           OS=Frankia sp. (strain EAN1pec) GN=Franean1_2244 PE=4
           SV=1
          Length = 476

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 3   WATILEARVRARRGCGSSNPAFESWFYSSKELRMVVE-NEFSRTTELRSLG 152
           W+   + R     GC +++PA   WFY+  +   +V+ +   R  + R LG
Sbjct: 385 WSVASQGRANVSHGCVNASPADAQWFYNFSQFGDIVDISNTGRPADTRQLG 435