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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943947
Clone id YMU02A01NGRL0004_H16
Library
Length 284
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_H16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATCTC
CCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGGCA
AAAATGATGAATAGAATAAATTGAAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGT
GGCAGAAGGGATCTCCCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGG
AGAAAGAATTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943947|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_H16, 5'
         (254 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q53N99
Definition tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp. japonica
Align length 34
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943947|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_H16, 5'
         (254 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    35   1.4  
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|Q9LMQ1|Q9LMQ1_ARATH F7H2.17 protein OS=Arabidopsis thaliana G...    35   1.9  
tr|Q2QW32|Q2QW32_ORYSJ Os12g0210400 protein OS=Oryza sativa subs...    34   3.2  
tr|B8BNM4|B8BNM4_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A3CFW6|A3CFW6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.2  

>tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0245200 PE=4 SV=1
          Length = 897

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 153 PFLSIYSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           P    YS    CP L P CLS QY+ P+C   +P
Sbjct: 347 PAAKPYSTQSICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35675 PE=4 SV=1
          Length = 954

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 153 PFLSIYSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           P    YS    CP L P CLS QY+ P+C   +P
Sbjct: 422 PAAKPYSTQSICPGLPPTCLSDQYLSPNCTCAVP 455


>tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032178 PE=4 SV=1
          Length = 893

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 153 PFLSIYSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           P    YS    CP L P CLS QY+ P+C   +P
Sbjct: 347 PAAKPYSTQSICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|Q9LMQ1|Q9LMQ1_ARATH F7H2.17 protein OS=Arabidopsis thaliana
            GN=F7H2.17 PE=4 SV=1
          Length = 1006

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = -3

Query: 252  PILSPPCLSFQYIIPSCLWEIPSATSDI**VSPPFLSIYSIHHFCPILSPPCLSFQYIIP 73
            PIL+PP   F   +P  + E P        + PP      +  F PIL+PP   F  I+P
Sbjct: 857  PILAPPADEFPPNLPPPVLEFPP-------IMPP-----PVQDFPPILTPPAEEFPPILP 904

Query: 72   SCLWEIP 52
              + EIP
Sbjct: 905  PPVQEIP 911


>tr|Q2QW32|Q2QW32_ORYSJ Os12g0210400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0210400 PE=2 SV=1
          Length = 967

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 159 SPPFLSIYSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           S P L  Y     CP L P CLS Q + P+C+  +P
Sbjct: 410 SNPALPPYKTTSNCPALPPTCLSTQQLSPTCICSVP 445


>tr|B8BNM4|B8BNM4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37810 PE=4 SV=1
          Length = 953

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 159 SPPFLSIYSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           S P L  Y     CP L P CLS Q + P+C+  +P
Sbjct: 396 SNPALPPYKTTSNCPALPPTCLSTQQLSPTCICSVP 431


>tr|A3CFW6|A3CFW6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034188 PE=4 SV=1
          Length = 1065

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 159 SPPFLSIYSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           S P L  Y     CP L P CLS Q + P+C+  +P
Sbjct: 370 SNPALPPYKTTSNCPALPPTCLSTQQLSPTCICSVP 405