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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943951
Clone id YMU02A01NGRL0004_H20
Library
Length 703
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_H20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTATTCAGTATGGCCATCTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGC
CCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCTCCAGGCCACTACCCTGTTCGCCCC
CAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTG
GAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGA
GCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGCT
CGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCG
GTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCCGCCAAGATGCCGCTGCTGTGCTGCG
TGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGA
CGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTT
CTTAAAGCAAGCCAATTTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCT
AAAAAAGCTTGCCTCTTATGAGCTTTTTGTGTCCCCAGCCACTTTTGCATACATTAATGA
AACAAACTTCCCCAGTGGTGGGAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 157
Score (bit) 179.0
E-value 1.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943951|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_H20, 5'
         (682 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   176   8e-44
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   175   2e-43
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   172   2e-42
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   172   2e-42
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   171   3e-42
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   171   3e-42
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   171   4e-42
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   170   6e-42
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   170   6e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   170   7e-42
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   169   1e-41
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   169   1e-41
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   169   2e-41
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   168   2e-41
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain...   168   2e-41
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain...   168   2e-41
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   168   3e-41
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   168   3e-41
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   167   4e-41
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   167   5e-41

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  179 bits (454), Expect = 1e-44
 Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 5/157 (3%)
 Frame = +2

Query: 71  SLSKSFSGLQATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 238
           SL+  F+GL++   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 239 EQIAKQVDFMVRKGWTPCIELD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAV 415
           E ++K++D+++R  W PC+E + + G VYREH H  GYYDGRYW MWKLPMFG  D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 416 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 526
           ++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  176 bits (447), Expect = 8e-44
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
 Frame = +2

Query: 71  SLSKSFSGLQATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 241
           +L+  F+GL+++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ E
Sbjct: 20  NLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDE 79

Query: 242 QIAKQVDFMVRKGWTPCIELD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVL 418
           Q+ K+V++++RKGW PC+E + + G V+R++    GYYDGRYW MW+LP+FG  DAA VL
Sbjct: 80  QLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVL 139

Query: 419 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 532
           +E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 140 KEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  176 bits (446), Expect = 1e-43
 Identities = 87/157 (55%), Positives = 110/157 (70%), Gaps = 5/157 (3%)
 Frame = +2

Query: 71  SLSKSFSGLQATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 238
           S+   F+ L++T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSS
Sbjct: 23  SMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSS 82

Query: 239 EQIAKQVDFMVRKGWTPCIELD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAV 415
           EQ+AK+VD+++RK   PC+E + + G VYREH    GYYDGRYW MWKLPMFG  D++ V
Sbjct: 83  EQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQV 142

Query: 416 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 526
           L+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 143 LKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  176 bits (445), Expect = 1e-43
 Identities = 86/157 (54%), Positives = 107/157 (68%), Gaps = 4/157 (2%)
 Frame = +2

Query: 71  SLSKSFSGLQATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 238
           S+   F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS 
Sbjct: 21  SMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSV 80

Query: 239 EQIAKQVDFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVL 418
           E +AK+VD+++R  W PCIE  K G VYRE+    GYYDGRYW MWKLPMFG  DA+ V+
Sbjct: 81  EDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVI 140

Query: 419 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
            E+ E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 141 AEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  175 bits (443), Expect = 2e-43
 Identities = 82/148 (55%), Positives = 101/148 (68%)
 Frame = +2

Query: 83  SFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 262
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 263 FMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREIAECAK 442
           +++R GW PCIE  K+G VYRE+ +  GYYDGRYW MWKLPMFG  D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 443 EYPEAFIRVLGFDAKRQVQVSGFLVQKP 526
            YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  175 bits (443), Expect = 2e-43
 Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 4/152 (2%)
 Frame = +2

Query: 86  FSGLQATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 253
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 254 QVDFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREIAE 433
           +VD+++R  W PCIE  K G VYRE+    GYYDGRYW MWKLPMFG  DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 434 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  172 bits (436), Expect = 1e-42
 Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 8/156 (5%)
 Frame = +2

Query: 83  SFSGLQATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 238
           +F+GL++T  F    K  N  A       SNG RV  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 239 EQIAKQVDFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVL 418
           EQ+ K+V++++R  W PC+E D  GS+ R++    GYYDGRYWVMWKLPMFG  +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 419 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 526
            E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  172 bits (436), Expect = 1e-42
 Identities = 83/162 (51%), Positives = 106/162 (65%), Gaps = 5/162 (3%)
 Frame = +2

Query: 71  SLSKSFSGLQATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 238
           S+  SF+GL++   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS 
Sbjct: 21  SMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSD 80

Query: 239 EQIAKQVDFMVRKGWTPCIELD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAV 415
           EQ+ K+++++++KGW PC+E + + G VYREH    GYYDGRYW MWKLPMFG  DA  V
Sbjct: 81  EQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQV 140

Query: 416 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV*TF 541
           L E+ E  K YP+A+IR++GFD  RQVQ   F+  KP    F
Sbjct: 141 LNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Medicago sativa PE=2 SV=1
          Length = 180

 Score =  172 bits (435), Expect = 2e-42
 Identities = 80/157 (50%), Positives = 111/157 (70%), Gaps = 5/157 (3%)
 Frame = +2

Query: 71  SLSKSFSGLQATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 238
           +L   F+GL+++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLPPL+ 
Sbjct: 21  NLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTE 80

Query: 239 EQIAKQVDFMVRKGWTPCIELD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAV 415
           EQ+AK+V++++RKGW PC+E + + G VYRE+    GYYDGRYW MW+LP+FG  D++ V
Sbjct: 81  EQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQV 140

Query: 416 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 526
           L+E+A+C  EYP++FIR++GFD  RQVQ   F+   P
Sbjct: 141 LKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  172 bits (435), Expect = 2e-42
 Identities = 84/153 (54%), Positives = 105/153 (68%), Gaps = 5/153 (3%)
 Frame = +2

Query: 86  FSGLQATTLF-----APKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 250
           F+GL+++  F     A K+ + L  SNG +VS M VW P   KKFETLSYLPPLS E +A
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 84

Query: 251 KQVDFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           K+VD+++R  W PCIE  K G VYRE+    GYYDGRYW MWKLPMFG  DA+ V+ E+ 
Sbjct: 85  KEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 144

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 154
Score (bit) 284.0
E-value 4.0e-75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943951|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_H20, 5'
         (682 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   284   4e-75
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   195   2e-48
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   192   2e-47
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   179   2e-43
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   178   3e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   178   3e-43
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   177   7e-43
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   177   7e-43
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   176   9e-43
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   176   2e-42
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   174   5e-42
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   174   5e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   174   5e-42
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   173   8e-42
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   173   8e-42
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   172   2e-41

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  284 bits (726), Expect = 4e-75
 Identities = 133/154 (86%), Positives = 145/154 (94%)
 Frame = +2

Query: 68  ESLSKSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQI 247
           ESLSKSFSGL+A TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QI
Sbjct: 20  ESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQI 79

Query: 248 AKQVDFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREI 427
           AKQV++MVRKGWTPCIE D IGSVYREHFHGSGYYDGRYW+MWKLPMFG  D+ +VLREI
Sbjct: 80  AKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREI 139

Query: 428 AECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           AECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 140 AECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  195 bits (496), Expect = 2e-48
 Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K FSGL++TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           DFM+++   PCIE D +GSV R +F G   SGYYDGRYW MWKLPMFG  D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  192 bits (488), Expect = 2e-47
 Identities = 91/153 (59%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K FSGL++TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           DFM+++   PCIE D +GSV R +F G   SGYYDGRYW MWKLPMFG  D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  191 bits (486), Expect = 3e-47
 Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL++ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           D+M+++   PCIE D +GSV R +F G   SGYYDGRYW MWKLPMFG  D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  191 bits (486), Expect = 3e-47
 Identities = 89/153 (58%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL++ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           D+M+++   PCIE D +G+V R +F G   SGYYDGRYW MWKLPMFG  D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           EC   YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  191 bits (486), Expect = 3e-47
 Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL+  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           D+M+++   PCIE D +GSV R +F G   SGYYDGRYW MWKLPMFG  D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  189 bits (479), Expect = 2e-46
 Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL++ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGRQDAAAVLREIA 430
           D+M+++   PCIE D +GSV R +F G   SGYYDGRYW MWKLPMFG  D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 431 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  182 bits (462), Expect = 2e-44
 Identities = 84/150 (56%), Positives = 107/150 (71%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL++ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREIAECA 439
           ++M+++   PC+E D    V R +    GYYDGRYW MWKLPMFG QD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 440 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  182 bits (461), Expect = 2e-44
 Identities = 85/150 (56%), Positives = 107/150 (71%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL+++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREIAECA 439
           D+M+++   PC+E D    V R +    GYYDGRYW MWKLPMFG QD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 440 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  182 bits (461), Expect = 2e-44
 Identities = 85/150 (56%), Positives = 108/150 (72%)
 Frame = +2

Query: 80  KSFSGLQATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 259
           K+FSGL++ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 260 DFMVRKGWTPCIELDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGRQDAAAVLREIAECA 439
           ++M+++   PC+E D    V RE+    GYYDGRYW MWKLPMFG QD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 440 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 529
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181