DK943956
Clone id YMU02A01NGRL0004_I02
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_I02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GTCAACTTTCCGTTCCAAATTGGACCTCTGTGTGATGTGAAAGTTACCCCGAAATTAAAG
TTTTGAGGTGCTTTTGCTTTGCAGTTTTAAACAATGACACAAAATGTTTTAATGACGTGC
AGGTTGTTCGGATCAACTTCTTTCGTGGATTTCAGTTTTCTGTTACTTGGTGGGCTTATA
CATTCCCAATGACTGCATCAACAATTGCAACAATCAACTATGCGGTTGAAGTTCGGCATC
CTATCACACAGGGTATGGCAGTCGTTCTCTCATGCATTTCAAGTGTGGTGGTTATGAGTG
TATTTGTGGCCACACTGTACCATGCAGTGAAGGGCAATCTACTTCCAAATGATGTGGCAA
TTGCCATCACGAGAAAGCGACACAAACGAAAGCAAAAGGGCTCAAAAGTAGATCCTCTGT
TTGAGAAGATGTCGAATGAGGATGAAGATGATTCAACAAAGCTGTTTTTGGCAAGTGAGG
GAGGGACCATTGTCGCGTCTCTTGAAAACGGTTTGATCAGTTTCACATCAGATCCTTTTC
CTGTGTGTG
■■Homology search results ■■ -
sp_hit_id Q63755
Definition sp|Q63755|PRDM2_RAT PR domain zinc finger protein 2 OS=Rattus norvegicus
Align length 54
Score (bit) 32.7
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943956|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_I02, 5'
(549 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q63755|PRDM2_RAT PR domain zinc finger protein 2 OS=Rattus no... 33 1.2
sp|P26552|VE5_HPV58 Probable protein E5 OS=Human papillomavirus ... 32 1.5
sp|Q8TYB7|PSMA_METKA Proteasome subunit alpha OS=Methanopyrus ka... 32 2.6
sp|P30985|HTF4_CHICK Transcription factor 12 (Fragment) OS=Gallu... 32 2.6
sp|Q8NFH3|NUP43_HUMAN Nucleoporin Nup43 OS=Homo sapiens GN=NUP43... 31 3.4
sp|Q39VS4|SYFB_GEOMG Phenylalanyl-tRNA synthetase beta chain OS=... 31 4.5
sp|Q07263|ACHA3_BOVIN Neuronal acetylcholine receptor subunit al... 30 7.7

>sp|Q63755|PRDM2_RAT PR domain zinc finger protein 2 OS=Rattus
norvegicus GN=Prdm2 PE=2 SV=1
Length = 1706

Score = 32.7 bits (73), Expect = 1.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3

Query: 294 MSVFVATLYHAVKGNLLPNDVAIAITRKRHKRK-QKGSKVDPLFEKMSNEDEDD 452
M + ++T+ HA K I R+RH+R+ + G K P S+ED DD
Sbjct: 374 MHIHISTINHAFKCKYCGKRFGTQINRRRHERRHETGLKRRPSMTLQSSEDPDD 427


>sp|P26552|VE5_HPV58 Probable protein E5 OS=Human papillomavirus
type 58 GN=E5 PE=3 SV=1
Length = 76

Score = 32.3 bits (72), Expect = 1.5
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 7/29 (24%)
Frame = +2

Query: 137 LLSWISV-------FCYLVGLYIPNDCIN 202
LL W+SV FCYL+ LYIP CIN
Sbjct: 38 LLLWVSVGSALRIFFCYLIFLYIPMMCIN 66


>sp|Q8TYB7|PSMA_METKA Proteasome subunit alpha OS=Methanopyrus
kandleri GN=psmA PE=3 SV=1
Length = 246

Score = 31.6 bits (70), Expect = 2.6
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3

Query: 306 VATLYHAVKGNLLPNDVAIAITRKRHKRKQKGSKVDPLFEKMSNEDEDD 452
V LY A + +++ IA+ K+ RK + K++ +FE++ +ED+
Sbjct: 196 VRALYEASREETTADNLEIAVVDKQGFRKLERKKIEEMFERVVGSEEDE 244


>sp|P30985|HTF4_CHICK Transcription factor 12 (Fragment) OS=Gallus
gallus GN=TCF12 PE=2 SV=2
Length = 657

Score = 31.6 bits (70), Expect = 2.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3

Query: 318 YHAVKGNLLPNDVAIAIT--RKRHKRKQKGSKVDPLFEKMSNEDEDDSTKLFLASEGGT 488
Y A+ G L VAI T + HK K + P + M ++DE + ++S G T
Sbjct: 474 YRALSGGLQSQSVAIGPTEIKSEHKEKDENIHEPPSSDDMKSDDESSQKDIKVSSRGRT 532


>sp|Q8NFH3|NUP43_HUMAN Nucleoporin Nup43 OS=Homo sapiens GN=NUP43
PE=1 SV=1
Length = 380

Score = 31.2 bits (69), Expect = 3.4
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2

Query: 131 DQLLSWISVFCYLVGLYIPNDCINNCNNQLCG*SSASYHTGYGSRSLMHFKCGGYEC 301
+++++ S C V L+ PN+ + N Q ++A YHTG GS S C G C
Sbjct: 86 ERIVAASSTGCVTVFLHHPNNQTLSVNQQW---TTAHYHTGPGSPSYSSAPCTGVVC 139


>sp|Q39VS4|SYFB_GEOMG Phenylalanyl-tRNA synthetase beta chain
OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=pheT PE=3 SV=1
Length = 801

Score = 30.8 bits (68), Expect = 4.5
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3

Query: 258 AVVLSCISSVVVMSVFVATLYHAVKGNLLP---NDVAIAITRKRHKRKQKGSKVDPLFEK 428
+ ++ CIS + + V A ++ KG+ +P +A+ I + H+R ++V PL ++
Sbjct: 728 STIVECISGLRIREVECAEIFDHYKGSHVPEGFKSIAVRIRYRSHERTLVDNEVTPLHQR 787

Query: 429 M 431
+
Sbjct: 788 I 788


>sp|Q07263|ACHA3_BOVIN Neuronal acetylcholine receptor subunit
alpha-3 OS=Bos taurus GN=CHRNA3 PE=2 SV=1
Length = 495

Score = 30.0 bits (66), Expect = 7.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2

Query: 302 ICGHTVPCSEGQSTSK*CGNCHHEKATQTKAKGLKSRSSV*EDVE 436
+C PC +G CG CHH +A + +RSS E V+
Sbjct: 380 VCKEGYPCQDGL-----CGYCHHRRAKISNFSANLTRSSSSESVD 419


tr_hit_id A7QKA1
Definition tr|A7QKA1|A7QKA1_VITVI Chromosome chr2 scaffold_112, whole genome shotgun sequence OS=Vitis vinifera
Align length 96
Score (bit) 109.0
E-value 8.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943956|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_I02, 5'
(549 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QKA1|A7QKA1_VITVI Chromosome chr2 scaffold_112, whole genom... 109 8e-23
tr|Q6I589|Q6I589_ORYSJ Os05g0584900 protein OS=Oryza sativa subs... 108 2e-22
tr|A3B790|A3B790_ORYSJ Putative uncharacterized protein OS=Oryza... 108 2e-22
tr|Q5ZE68|Q5ZE68_ORYSJ Putative uncharacterized protein P0501G01... 106 9e-22
tr|A2WSR8|A2WSR8_ORYSI Putative uncharacterized protein OS=Oryza... 106 9e-22
tr|A2Y7Z7|A2Y7Z7_ORYSI Putative uncharacterized protein OS=Oryza... 105 1e-21
tr|B6SWN8|B6SWN8_MAIZE C4-dicarboxylate transporter/malic acid t... 102 2e-20
tr|A7QGD4|A7QGD4_VITVI Chromosome undetermined scaffold_91, whol... 102 2e-20
tr|A2ZQW2|A2ZQW2_ORYSJ Putative uncharacterized protein OS=Oryza... 100 7e-20
tr|Q9FLV9|Q9FLV9_ARATH Similarity to unknown protein (At5g24030)... 100 9e-20
tr|Q75G55|Q75G55_ORYSJ Os05g0219900 protein OS=Oryza sativa subs... 99 1e-19
tr|Q5NAK4|Q5NAK4_ORYSJ Putative uncharacterized protein P0443E07... 99 1e-19
tr|Q5NAK3|Q5NAK3_ORYSJ cDNA clone:J023143J08, full insert sequen... 99 1e-19
tr|Q0JPE8|Q0JPE8_ORYSJ Os01g0226600 protein (Fragment) OS=Oryza ... 99 1e-19
tr|B8AAY8|B8AAY8_ORYSI Putative uncharacterized protein OS=Oryza... 99 1e-19
tr|A2Y1P3|A2Y1P3_ORYSI Putative uncharacterized protein OS=Oryza... 99 1e-19
tr|Q9LD83|Q9LD83_ARATH T12C24.3 (At1g12480/T12C24_4) (F5O11.23) ... 97 6e-19
tr|A9RU49|A9RU49_PHYPA Predicted protein (Fragment) OS=Physcomit... 97 7e-19
tr|Q8L4G8|Q8L4G8_ORYSJ C4-dicarboxylate transporter-like protein... 96 9e-19
tr|A2WQC0|A2WQC0_ORYSI Putative uncharacterized protein OS=Oryza... 96 9e-19
tr|Q7XTX7|Q7XTX7_ORYSJ Os04g0574700 protein OS=Oryza sativa subs... 91 5e-17
tr|A2XWN1|A2XWN1_ORYSI Putative uncharacterized protein OS=Oryza... 91 5e-17
tr|Q9SUE2|Q9SUE2_ARATH Putative uncharacterized protein T13J8.80... 89 2e-16
tr|Q9ASQ7|Q9ASQ7_ARATH AT4g27970/T13J8_80 OS=Arabidopsis thalian... 89 2e-16
tr|A9SH15|A9SH15_PHYPA Predicted protein (Fragment) OS=Physcomit... 87 4e-16
tr|A9RQS2|A9RQS2_PHYPA Predicted protein (Fragment) OS=Physcomit... 85 2e-15
tr|A2YIS4|A2YIS4_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13
tr|Q6ZLB6|Q6ZLB6_ORYSJ Os07g0181100 protein OS=Oryza sativa subs... 76 1e-12
tr|A3BH69|A3BH69_ORYSJ Putative uncharacterized protein OS=Oryza... 76 1e-12
tr|A9TDH3|A9TDH3_PHYPA Predicted protein OS=Physcomitrella paten... 67 6e-10

>tr|A7QKA1|A7QKA1_VITVI Chromosome chr2 scaffold_112, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001037001
PE=4 SV=1
Length = 553

Score = 109 bits (273), Expect = 8e-23
Identities = 55/96 (57%), Positives = 73/96 (76%), Gaps = 1/96 (1%)
Frame = +3

Query: 123 VVRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSV 302
VVRINFFRGF+FSV WW+YTFPMT ++ATI YA +V +++G+AV LS +SS +V +
Sbjct: 420 VVRINFFRGFRFSVAWWSYTFPMTTVSVATIKYAEQVPSVLSKGLAVFLSFMSSTMVSVL 479

Query: 303 FVATLYHA-VKGNLLPNDVAIAITRKRHKRKQKGSK 407
FV+TL HA V L PND+AIAIT+++H R +K K
Sbjct: 480 FVSTLLHAFVWHTLFPNDLAIAITKRKHGRDKKPFK 515


>tr|Q6I589|Q6I589_ORYSJ Os05g0584900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0009C07.7 PE=2 SV=1
Length = 377

Score = 108 bits (270), Expect = 2e-22
Identities = 62/126 (49%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VR+N FRGF+FS+ WWAYTFPMT++ IAT+ YA EV + T+ MAV LS I++V V V
Sbjct: 233 VRVNMFRGFRFSLAWWAYTFPMTSAAIATVLYASEVTNVATRAMAVGLSGIATVTVTGVL 292

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHK-------RKQKGSKVDPL-FEKMSNEDEDDST 458
V T+YHA V+ +L PNDV+IAITR++ K + G+ V L F S DDS
Sbjct: 293 VTTMYHAFVRRDLFPNDVSIAITRRKPKFSKILAHLRSSGTDVKELVFSVSSKNGADDSA 352

Query: 459 KLFLAS 476
+ AS
Sbjct: 353 SVSKAS 358


>tr|A3B790|A3B790_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_018912 PE=4 SV=1
Length = 602

Score = 108 bits (270), Expect = 2e-22
Identities = 62/126 (49%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VR+N FRGF+FS+ WWAYTFPMT++ IAT+ YA EV + T+ MAV LS I++V V V
Sbjct: 458 VRVNMFRGFRFSLAWWAYTFPMTSAAIATVLYASEVTNVATRAMAVGLSGIATVTVTGVL 517

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHK-------RKQKGSKVDPL-FEKMSNEDEDDST 458
V T+YHA V+ +L PNDV+IAITR++ K + G+ V L F S DDS
Sbjct: 518 VTTMYHAFVRRDLFPNDVSIAITRRKPKFSKILAHLRSSGTDVKELVFSVSSKNGADDSA 577

Query: 459 KLFLAS 476
+ AS
Sbjct: 578 SVSKAS 583


>tr|Q5ZE68|Q5ZE68_ORYSJ Putative uncharacterized protein P0501G01.17
(Putative uncharacterized protein) (Os01g0623200
protein) OS=Oryza sativa subsp. japonica GN=P0501G01.17
PE=4 SV=1
Length = 686

Score = 106 bits (264), Expect = 9e-22
Identities = 56/106 (52%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VRINFFRGF+FS+ WWAYTFPMT + IATI YA EV + +T+ +++ LS I++V V +
Sbjct: 546 VRINFFRGFRFSLAWWAYTFPMTGAAIATITYATEVTNVLTRALSIGLSGIATVTVAGLL 605

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHKRKQKGSKVDPLFEKMSNE 440
V T++HA V +L PNDV+IAITRK K K SK+ F S++
Sbjct: 606 VTTMFHAFVLKDLFPNDVSIAITRK----KPKFSKILAHFRSSSSD 647


>tr|A2WSR8|A2WSR8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_02913 PE=4 SV=1
Length = 638

Score = 106 bits (264), Expect = 9e-22
Identities = 56/106 (52%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VRINFFRGF+FS+ WWAYTFPMT + IATI YA EV + +T+ +++ LS I++V V +
Sbjct: 498 VRINFFRGFRFSLAWWAYTFPMTGAAIATITYATEVTNVLTRALSIGLSGIATVTVAGLL 557

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHKRKQKGSKVDPLFEKMSNE 440
V T++HA V +L PNDV+IAITRK K K SK+ F S++
Sbjct: 558 VTTMFHAFVLKDLFPNDVSIAITRK----KPKFSKILAHFRSSSSD 599


>tr|A2Y7Z7|A2Y7Z7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21165 PE=4 SV=1
Length = 619

Score = 105 bits (263), Expect = 1e-21
Identities = 56/96 (58%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VR+N FRGF+FS+ WWAYTFPMT++ IAT+ YA EV + T+ MAV LS I++V V V
Sbjct: 458 VRVNMFRGFRFSLAWWAYTFPMTSAAIATVLYASEVTNVATRAMAVGLSGIATVTVTGVL 517

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHKRKQKGSKV 410
V T+YHA V+ +L PNDV+IAITR RK K SK+
Sbjct: 518 VTTMYHAFVRRDLFPNDVSIAITR----RKPKFSKI 549


>tr|B6SWN8|B6SWN8_MAIZE C4-dicarboxylate transporter/malic acid
transport protein OS=Zea mays PE=2 SV=1
Length = 634

Score = 102 bits (253), Expect = 2e-20
Identities = 56/112 (50%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VRINFFRGF+FS+ WWAYTFPMT + IA+I Y+ EV + T+ + V LS I+ + V ++F
Sbjct: 519 VRINFFRGFRFSLAWWAYTFPMTGAAIASIRYSTEVDNTFTKALCVALSVIAVLTVTALF 578

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHKRKQKGSKVDPLFEKMSNEDEDDST 458
V TL HA V L PND+ IAIT HK K P+ E + ED ST
Sbjct: 579 VTTLVHAFVLRKLFPNDICIAIT--DHKMK-------PIMELHESHGEDSST 621


>tr|A7QGD4|A7QGD4_VITVI Chromosome undetermined scaffold_91, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00037797001 PE=4 SV=1
Length = 486

Score = 102 bits (253), Expect = 2e-20
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VR+NFFRGF+FS+ WWAYTFPMT + IATI Y+ EV + +T+ ++V LS I+ + V ++
Sbjct: 353 VRVNFFRGFRFSLAWWAYTFPMTGAAIATIRYSNEVTNIVTRSLSVTLSAIAILTVTALL 412

Query: 306 VATLYHA-VKGNLLPNDVAIAITRKRHKRKQKGSKVDPLFEKMSNEDEDDSTKLFLASEG 482
+ T+ HA V +L PND+AIAI+ +R K +K L S+ E ++ F +S+
Sbjct: 413 ITTILHAFVLQDLFPNDIAIAISERRRKTSKKWYH---LRTGSSDTKEIENFLKFGSSDN 469

Query: 483 GTIVASLE 506
I ASL+
Sbjct: 470 KDIEASLK 477


>tr|A2ZQW2|A2ZQW2_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000934 PE=4 SV=1
Length = 636

Score = 100 bits (248), Expect = 7e-20
Identities = 47/101 (46%), Positives = 73/101 (72%), Gaps = 8/101 (7%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VRIN FRGF+FS+ WWAYTFPMT++ IA+I Y+ EV++ TQ + + LS ++++ V ++F
Sbjct: 505 VRINLFRGFRFSLAWWAYTFPMTSAAIASIRYSSEVKNAFTQSLCIALSVLATLTVTALF 564

Query: 306 VATLYH-AVKGNLLPNDVAIAITRKR-------HKRKQKGS 404
+ TL H AV +L PND++IAIT ++ H+++Q+ S
Sbjct: 565 LTTLLHAAVHRDLFPNDISIAITERKLKPIAEIHEQQQRSS 605


>tr|Q9FLV9|Q9FLV9_ARATH Similarity to unknown protein (At5g24030)
OS=Arabidopsis thaliana GN=At5g24030 PE=2 SV=1
Length = 635

Score = 99.8 bits (247), Expect = 9e-20
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Frame = +3

Query: 126 VRINFFRGFQFSVTWWAYTFPMTASTIATINYAVEVRHPITQGMAVVLSCISSVVVMSVF 305
VRINFFRG +FS++WWAYTFPMT + IATI YA V+ +TQ M VVL I+++VV ++
Sbjct: 498 VRINFFRGIKFSLSWWAYTFPMTGAAIATIRYATVVKSTMTQIMCVVLCAIATLVVFALL 557

Query: 306 VATLYHA-VKGNLLPNDVAIAIT-RKRHKRKQKGSKVDPLFEKMSNEDEDDSTK 461
V T+ HA V +L PND+AIAI+ R R K+ + +D L +S+E+ ++ K
Sbjct: 558 VTTIIHAFVLRDLFPNDLAIAISNRPRPKQNSQHRWLDQL-RNVSSENIENYLK 610