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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943958
Clone id YMU02A01NGRL0004_I04
Library
Length 218
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_I04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
TGGATGATCATATTCAACACCATGCCAAAGCTCTGTTTTCTTAAGAGACCAGCCCTACAC
TCCAAACTAGATCAATCAGGGAGATGAGTGCTTTTCTTTTGTGATGTATACGTAACAAAA
TTATATTGAGTTTTGGTGGTTGATGTTGAATAAATAGAGCGAAATCTCCCTGCATTAAGC
AAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8K442
Definition sp|Q8K442|ABC8A_MOUSE ATP-binding cassette sub-family A member 8-A OS=Mus musculus
Align length 45
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943958|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_I04, 5'
         (188 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K442|ABC8A_MOUSE ATP-binding cassette sub-family A member 8...    30   5.0  

>sp|Q8K442|ABC8A_MOUSE ATP-binding cassette sub-family A member 8-A
           OS=Mus musculus GN=Abca8a PE=2 SV=1
          Length = 1620

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 181 CLMQGDFALFIQHQPPKLNIILLRIHHKRKALISLIDLVWSVGLV 47
           C M+G  AL+ Q       +  L++ H+RK+++ LI LV  +GL+
Sbjct: 830 CKMKGGMALWWQQLCAVTRLRFLKLKHERKSIVILI-LVLGIGLL 873
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943958|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_I04, 5'
         (188 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******